PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4DS_AE4107C25.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GRAS

Protein Properties

Length: 474aa MW: 52191.1 Da PI: 4.8079

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4DS_AE4107C25.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	215.1	3.7e-66	103	465	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlsel..aspdg...dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 ++lLl+ Aeav++gd + a a+ +rl l sp+ ++ Rla +f+++L++r+++ +++++ lp s++++++++ Traes_4DS_AE4107C25.1 103 TDLLLTGAEAVEAGDPRFALAVFSRLDGLllGSPENaaaGSFDRLAYHFAQGLRSRISSASTSCS--LPEP-----LPSDRMSVQHII 183 689*********************998885554422379*************9332222..3322.....346899999* PP GRAS 85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeel 172 +e+sP+ kf+h+taNqaIl+a++g+++vHi+D++i++G+QWp+L+ La g s+ +T+v + + s ++ ++rL++fA++l Traes_4DS_AE4107C25.1 184 QELSPFAKFAHFTANQAILDATKGDTHVHIVDLNIGEGIQWPSLMSDLARH--GGMSFHLTAVTADADYSDGVHHASARRLSEFADSL 269 ***********************************************84..6689****8877999999********* PP GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevL.klvkslsPkvvvvveqeadh.nse......s 252 ++pf+++ l ++ ed l+e++ + + +++ ++ ++ +l s+ +++L +vk l+Pk++v+ve+e+ + ++e s Traes_4DS_AE4107C25.1 270 NLPFQYSSLCLHSDED--LHEFSKNCKGSVILSCDTTG--MP---YKLLSKLPALLpACVKLLQPKLMVIVEEELVRvGKEaslckaS 350 ****86655444..57887777888888887743..33...345555677773579**********95543444566666 PP GRAS 253 Flerflealeyysalfdsl.eaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338 F++ f+eal++++++f+sl + ++ ++ + vEre++g++i++ v + g+ +e ++ le+ G + ls +++qa+ Traes_4DS_AE4107C25.1 351 FVDFFFEALHHFTTVFESLaSCFFGGNQgACLRLVEREMVGPRIQDFVGQYGSVTVEVTT-----PVVLERYG--ACDLSGCNVAQAR 431 *****************555566665678899***************9666666.....57888876..899****** PP GRAS 339 lllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 +l+ ++ +g++v +e+g lvl+Wk+rpL+svS+W Traes_4DS_AE4107C25.1 432 MLVGLFN-RGFEVVHEKGRLVLCWKSRPLTSVSVW 465 ***.************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	30.333	76	447	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.3E-63	103	465	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence Send to blast
METMSYPCSP LLSLPTHEES NFFMWSPQVA LHENATIHVD HPTDQQPDNV FLDTAVQDYA 60 NDWHQQDASD VGVFTYCDER IQGQESGNLV AIQEELMEEN SLTDLLLTGA EAVEAGDPRF 120 ALAVFSRLDG LLLGSPENAA AGSFDRLAYH FAQGLRSRIS SASTSCSLPE PLPSDRMSVQ 180 HIIQELSPFA KFAHFTANQA ILDATKGDTH VHIVDLNIGE GIQWPSLMSD LARHGGMSFH 240 LTAVTADADY SDGVHHASAR RLSEFADSLN LPFQYSSLCL HSDEDLHEFS KNCKGSVILS 300 CDTTGMPYKL LSKLPALLPA CVKLLQPKLM VIVEEELVRV GKEASLCKAS FVDFFFEALH 360 HFTTVFESLA SCFFGGNQGA CLRLVEREMV GPRIQDFVGQ YGSVTVEVTT PVVLERYGAC 420 DLSGCNVAQA RMLVGLFNRG FEVVHEKGRL VLCWKSRPLT SVSVWAPILK ERSS

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence Send to blast

METMSYPCSP LLSLPTHEES NFFMWSPQVA LHENATIHVD HPTDQQPDNV FLDTAVQDYA  60
NDWHQQDASD VGVFTYCDER IQGQESGNLV AIQEELMEEN SLTDLLLTGA EAVEAGDPRF  120
ALAVFSRLDG LLLGSPENAA AGSFDRLAYH FAQGLRSRIS SASTSCSLPE PLPSDRMSVQ  180
HIIQELSPFA KFAHFTANQA ILDATKGDTH VHIVDLNIGE GIQWPSLMSD LARHGGMSFH  240
LTAVTADADY SDGVHHASAR RLSEFADSLN LPFQYSSLCL HSDEDLHEFS KNCKGSVILS  300
CDTTGMPYKL LSKLPALLPA CVKLLQPKLM VIVEEELVRV GKEASLCKAS FVDFFFEALH  360
HFTTVFESLA SCFFGGNQGA CLRLVEREMV GPRIQDFVGQ YGSVTVEVTT PVVLERYGAC  420
DLSGCNVAQA RMLVGLFNRG FEVVHEKGRL VLCWKSRPLT SVSVWAPILK ERSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	5e-34	143	467	55	380	Protein SCARECROW
5b3h_A	4e-34	143	467	54	379	Protein SCARECROW
5b3h_D	4e-34	143	467	54	379	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020176685.1	0.0	nodulation-signaling pathway 2 protein-like
TrEMBL	A0A3B6JI44	0.0	A0A3B6JI44_WHEAT; Uncharacterized protein
TrEMBL	A0A453HMQ0	0.0	A0A453HMQ0_AEGTS; Uncharacterized protein
STRING	Traes_4DS_AE4107C25.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7684	32	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08250.1	1e-36	GRAS family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]