PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DS_ADBA6E30A.1
Common NameRHT1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 353aa    MW: 38514.5 Da    PI: 5.9608
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DS_ADBA6E30A.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS423.12.3e-129134938374
                   GRAS  38 mqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...fsevsPilkfshltaNqaIleavegeervHiiDfdisqG 122
                            m+++aayf eALa+r++r        ++p+++s  +  ++++a+ l   f+e +P+lkf+h+taNqaIlea++g++rvH++Df+i+qG
  Traes_4DS_ADBA6E30A.1   1 MRKVAAYFGEALARRVFR--------FRPQPDS--SLLDAAFADLLhahFYESCPYLKFAHFTANQAILEAFAGCRRVHVVDFGIKQG 78 
                            79****************........5555555..34444444444456*************************************** PP

                   GRAS 123 lQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.......gEala 203
                            +QWpaLlqaLa Rp+gpps+R+Tgvg+p+++++++l+++g++La+fA++++v+f+++ lva +l+dle+ +L+ +         E++a
  Traes_4DS_ADBA6E30A.1  79 MQWPALLQALALRPGGPPSFRLTGVGPPQPDETDALQQVGWKLAQFAHTIRVDFQYRGLVAATLADLEPFMLQPEGeedpneePEVIA 166
                            ************************************************************************544444557789**** PP

                   GRAS 204 VnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak...............lp 276
                            Vn+v+++hrll+++++le+    vL +v+ ++P++v+vveqea+hns++Fl+rf+e+l+yys++fdsle +               +p
  Traes_4DS_ADBA6E30A.1 167 VNSVFEMHRLLAQPGALEK----VLGTVRAVRPRIVTVVEQEANHNSGTFLDRFTESLHYYSTMFDSLEGGssgggpsevssgaaaAP 250
                            *******************....*********************************************98889***********9999 PP

                   GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWk 363
                            +++ +++++++++lgr+i+nvvacegaer+erhetl++Wr+rl++aGF++v+l+++a+kqa++ll+ ++ +dgy+vee++g+l+lgW+
  Traes_4DS_ADBA6E30A.1 251 AAAGTDQVMSEVYLGRQICNVVACEGAERTERHETLGQWRNRLGNAGFETVHLGSNAYKQASTLLALFAgGDGYKVEEKEGCLTLGWH 338
                            999************************************************************************************* PP

                   GRAS 364 drpLvsvSaWr 374
                            +rpL+++SaWr
  Traes_4DS_ADBA6E30A.1 339 TRPLIATSAWR 349
                            **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035148.1E-1271349IPR005202Transcription factor GRAS
PROSITE profilePS5098561.3081328IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MRKVAAYFGE ALARRVFRFR PQPDSSLLDA AFADLLHAHF YESCPYLKFA HFTANQAILE  60
AFAGCRRVHV VDFGIKQGMQ WPALLQALAL RPGGPPSFRL TGVGPPQPDE TDALQQVGWK  120
LAQFAHTIRV DFQYRGLVAA TLADLEPFML QPEGEEDPNE EPEVIAVNSV FEMHRLLAQP  180
GALEKVLGTV RAVRPRIVTV VEQEANHNSG TFLDRFTESL HYYSTMFDSL EGGSSGGGPS  240
EVSSGAAAAP AAAGTDQVMS EVYLGRQICN VVACEGAERT ERHETLGQWR NRLGNAGFET  300
VHLGSNAYKQ ASTLLALFAG GDGYKVEEKE GCLTLGWHTR PLIATSAWRL AGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-57234857378Protein SCARECROW
5b3h_A6e-57234856377Protein SCARECROW
5b3h_D6e-57234856377Protein SCARECROW
5hyz_A6e-57334942375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2425310.0AJ242531.1 Triticum aestivum rht-D1a gene for gibberellin response modulator.
GenBankFR6685910.0FR668591.1 Triticum aestivum rht-D1 gene, allele f.
GenBankFR6685930.0FR668593.1 Triticum aestivum rht-D1 gene, allele i.
GenBankGQ4513340.0GQ451334.1 Triticum aestivum cultivar Xiaoyan 54 DELLA protein RHT-D1 gene, complete cds.
GenBankHE5856430.0HE585643.1 Triticum aestivum Rht-D1 gene for DELLA protein, allele Rht-D1a.
GenBankHQ4353250.0HQ435325.1 Triticum aestivum clone BAC 1J9 Tmemb_185A domain-containing protein (1J9.1), EamA domain-containing protein (1J9.2), and Rht-D1b (Rht-D1b) genes, complete cds, complete sequence.
GenBankJF9302810.0JF930281.1 Triticum aestivum DELLA protein (Rht-D1) gene, Rht-D1b allele, complete cds.
GenBankKC6146360.0KC614636.1 Triticum aestivum cultivar Mercia bio-material JIC:9333 haplotype Rht-D1a_3 DELLA protein (Rht-D1) gene, complete cds.
GenBankKC6146370.0KC614637.1 Triticum aestivum cultivar Paragon bio-material NIAB EW10 haplotype Rht-D1a_3 DELLA protein (Rht-D1) gene, complete cds.
GenBankKC6146380.0KC614638.1 Triticum aestivum cultivar AS68VM4-3-2/TJB636 13 bio-material INRA:15950 haplotype Rht-D1b_1 truncated DELLA protein (Rht-D1) gene, Rht-D1b allele, complete cds.
GenBankKC6146390.0KC614639.1 Triticum aestivum cultivar Avalon bio-material NIAB EW2 haplotype Rht-D1b_1 truncated DELLA protein (Rht-D1) gene, Rht-D1b allele, complete cds.
GenBankKC6146400.0KC614640.1 Triticum aestivum cultivar DC147U bio-material INRA:08287 haplotype Rht-D1b_1 truncated DELLA protein (Rht-D1) gene, Rht-D1b allele, complete cds.
GenBankKC6146410.0KC614641.1 Triticum aestivum cultivar Gaines bio-material JIC:814 haplotype Rht-D1b_1 truncated DELLA protein (Rht-D1) gene, Rht-D1b allele, complete cds.
GenBankKC6146420.0KC614642.1 Triticum aestivum cultivar Hobbit 'Sib' bio-material NIAB EW7 haplotype Rht-D1b_1 truncated DELLA protein (Rht-D1) gene, Rht-D1b allele, complete cds.
GenBankKC6146430.0KC614643.1 Triticum aestivum cultivar N67M2 bio-material INRA:05096 haplotype Rht-D1b_1 truncated DELLA protein (Rht-D1) gene, Rht-D1b allele, complete cds.
GenBankKC6146440.0KC614644.1 Triticum aestivum cultivar Norin 10 bio-material USDA:PI156641 haplotype Rht-D1b_1 truncated DELLA protein (Rht-D1) gene, Rht-D1b allele, complete cds.
GenBankKC6146450.0KC614645.1 Triticum aestivum cultivar Norin 10/Brevor-14 bio-material USDA:Cltr13253 haplotype Rht-D1b_1 truncated DELLA protein (Rht-D1) gene, Rht-D1b allele, complete cds.
GenBankKC6146460.0KC614646.1 Triticum aestivum cultivar Sonora 64 bio-material JIC:613 haplotype Rht-D1b_1 truncated DELLA protein (Rht-D1) gene, Rht-D1b allele, complete cds.
GenBankKC6146470.0KC614647.1 Triticum aestivum cultivar Xi19 bio-material NIAB EW11-3 haplotype Rht-D1b_1 truncated DELLA protein (Rht-D1) gene, Rht-D1b allele, complete cds.
GenBankKC7679270.0KC767927.1 Triticum aestivum cultivar Wangshuibai DELLA (Rht-D1) gene, Rht-D1a allele, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020147810.10.0DELLA protein RHT-1
SwissprotQ9ST590.0RHT1_WHEAT; DELLA protein RHT-1
TrEMBLA0A453H6A50.0A0A453H6A5_AEGTS; Uncharacterized protein
TrEMBLI3NM210.0I3NM21_WHEAT; Rht-D1b
TrEMBLI6LLR50.0I6LLR5_WHEAT; DELLA
TrEMBLI7HKX20.0I7HKX2_WHEAT; RHT-D1 protein
TrEMBLI7HZD80.0I7HZD8_WHEAT; RHT-D1 protein
STRINGTraes_4DS_ADBA6E30A.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-157GRAS family protein
Publications ? help Back to Top
  1. Peng J, et al.
    'Green revolution' genes encode mutant gibberellin response modulators.
    Nature, 1999. 400(6741): p. 256-61
    [PMID:10421366]
  2. Wilhelm EP, et al.
    Genetic characterization and mapping of the Rht-1 homoeologs and flanking sequences in wheat.
    Theor. Appl. Genet., 2013. 126(5): p. 1321-36
    [PMID:23381809]