PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DS_352C41430.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 648aa MW: 72153.9 Da PI: 8.9962 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.5 | 7.8e-16 | 79 | 158 | 13 | 98 |
TT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 13 sgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 rl +p +f ++ + ++++ ++l+ +sg++W +l ++ ++ kGWkeFv+++ ++ g f++F++dgrs+f v +f+ Traes_4DS_352C41430.2 79 GERLKIPPSFN-QYlQDQPTG--VVSLKGQSGNTWLAEL--ASDNEGLFFVKGWKEFVRDHSIEMGHFLTFRYDGRSKF--SVVIFD 158 5689******8.665777666..7***************..888888****************************9999..777776 PP | |||||||
2 | B3 | 47.6 | 3.1e-15 | 543 | 633 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 +++ s+v l lp +f++e+ ++ +++l+l +++g+sW+v++ y ++ l++GW +F +n+L+ D++vF+l + + + Traes_4DS_352C41430.2 543 IMKESYVYVGFFLNLPCEFVRECL--PRAHRKLKLWNPQGKSWDVNYVYYSERCVGGLSGGWGKFSLDNNLEKFDVCVFELFS--KDN 626 678899999999***********5..345568***************887777777899*********************875..444 PP .EEEEE- CS B3 92 lvvkvfr 98 +v+++r Traes_4DS_352C41430.2 627 IKVHIYR 633 6888876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.1E-19 | 68 | 158 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.1E-19 | 69 | 158 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.71E-17 | 69 | 158 | No hit | No description |
SMART | SM01019 | 2.2E-13 | 69 | 160 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-14 | 79 | 158 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.31 | 80 | 160 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.7E-23 | 531 | 633 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.22E-22 | 533 | 633 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.337 | 540 | 635 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.4E-13 | 540 | 635 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.92E-22 | 542 | 633 | No hit | No description |
Pfam | PF02362 | 4.7E-13 | 543 | 633 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 648 aa Download sequence Send to blast |
MVGNRRLELQ ERDRRRRQLQ ESAWREEQER ESREAAAAAA MAAADKERAR EKGKEKENGG 60 EGGKFGQQFA RVFLPQLYGE RLKIPPSFNQ YLQDQPTGVV SLKGQSGNTW LAELASDNEG 120 LFFVKGWKEF VRDHSIEMGH FLTFRYDGRS KFSVVIFDGM CIEKPSAFHA KPCKNLVVKI 180 ESGKGDMDIN AADPSQASAA PLEESNGTTR KRVTEMDADG STSKNRSSIL ENGMPEASAV 240 TCNVAPTSLN VDMNAADPPE AVVVPLEESN QTTRKRIREI DANDSALQKS LRVREIDANG 300 SALQKSLRVR EIDANDSALQ KSSRVREIDA NDSALQSSRV REIDANETAL HKSSRVREID 360 ANDSALHKSS RVREIDANDS ALHKSSRVRE IDANDSALQK SSRVREIDAN DSSLQKSSGL 420 REIDANDSAL QKSSIASDKD KKRCPAASVG TYKSASTSLD STEDSDSSSS MLEQSISCIK 480 SELTSPIRLG VSKDVARRGQ NSATGKRQLR VLSQRRLVTE IQKDNALLRA KQFKSKNPFG 540 LQIMKESYVY VGFFLNLPCE FVRECLPRAH RKLKLWNPQG KSWDVNYVYY SERCVGGLSG 600 GWGKFSLDNN LEKFDVCVFE LFSKDNIKVH IYRVVPEITP FLPGPGKK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 9e-13 | 513 | 634 | 22 | 142 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 9e-13 | 513 | 634 | 22 | 142 | B3 domain-containing transcription factor VRN1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK365926 | 0.0 | AK365926.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2039A04. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020166536.1 | 0.0 | B3 domain-containing protein Os11g0197600-like | ||||
Swissprot | Q2R9D2 | 2e-77 | Y1176_ORYSJ; B3 domain-containing protein Os11g0197600 | ||||
TrEMBL | A0A3B6JHP8 | 0.0 | A0A3B6JHP8_WHEAT; Uncharacterized protein | ||||
STRING | Traes_4DS_352C41430.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4461 | 37 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 2e-16 | B3 family protein |
Publications ? help Back to Top | |||
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