PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DS_35269C392.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TALE
Protein Properties Length: 664aa    MW: 69348.7 Da    PI: 6.4053
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DS_35269C392.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.91.9e-093644011954
                            HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
               Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                            Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Traes_4DS_35269C392.1 364 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 401
                            664459******************************88 PP
2BELL113.41.2e-36220291172
                   BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                            erqelq+kk kL+++l+eV++rY+qy++q+  v ssFeavag gsa+ Yt+lAl++iSr+FrcL+daia+q+
  Traes_4DS_35269C392.1 220 ERQELQMKKGKLVNMLDEVEQRYRQYHQQMASVSSSFEAVAGAGSARTYTALALRTISRQFRCLRDAIASQV 291
                            79********************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.2E-53144289IPR006563POX domain
PfamPF075262.1E-49149288IPR006563POX domain
PROSITE profilePS5007112.228342405IPR001356Homeobox domain
SMARTSM003891.2E-9345409IPR001356Homeobox domain
CDDcd000863.60E-13345406No hitNo description
SuperFamilySSF466893.55E-17346412IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.7E-29348411IPR009057Homeodomain-like
PfamPF059202.6E-18362401IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MAAYYHGGAG TDIHQAGSDG LQTLYLMNPS YGNGSYGDAG PSGANMMLLN SAVSSMTPAS  60
FGGHQASPPP GQHFVGIPLQ APPSGYNLWT PATTGIADVM SPPTQQAHGV SAVLSLSSRE  120
TPPVTVASIA GDEGRYHLGA TTAASQGQVV MNSKYLRAAQ ELLDEVVSVS KGVDDVDAKA  180
KSAVSVKKKE DSEGLSGGGG EEGASGAKGG APAPEMSTAE RQELQMKKGK LVNMLDEVEQ  240
RYRQYHQQMA SVSSSFEAVA GAGSARTYTA LALRTISRQF RCLRDAIASQ VRAASRALGE  300
DCDAEGLGGG LGGGRGVGSR LRYIDHQLRQ QRALQQLGMM QSSAWRPQRG LPERSVSILR  360
AWLFEHFLHP YPKDSDKIML AKQTGLTRSQ VSNWFINARV RLWKPMVEEM YLEETKEHQQ  420
QQDGGDDKGR PTGSGPAGGK SSSNADGVDD GTPRSMARAA VGAGTSEGGG AVQASLLELA  480
GDHQAHAGFY DEEGEDGGLR RGFKKARAAD LEQQPPAAFD FGALHHAQAA AAAAAAAARQ  540
QHDEVTHREL LMKFMESGGA AGARDHHHHQ QDEDGAGGGY SLFAPGPYGQ FGTDQSFAFA  600
GAGQHGGVSL TLGLPHGAGD QTAFLMGGGS SNGADSGGSG AAGYDMNMQT TKSFAAQLMR  660
DFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A3e-17351409563Homeobox protein Meis2
4xrm_B3e-17351409563Homeobox protein Meis2
5bng_A2e-17351409159Homeobox protein Meis2
5bng_B2e-17351409159Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3546390.0AK354639.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1009H02.
GenBankAK3550780.0AK355078.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1015J22.
GenBankAK3665360.0AK366536.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2043O18.
GenBankAK3743450.0AK374345.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3061L07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178285.10.0BEL1-like homeodomain protein 1
RefseqXP_020178286.10.0BEL1-like homeodomain protein 1
TrEMBLA0A3B6JHR20.0A0A3B6JHR2_WHEAT; Uncharacterized protein
TrEMBLA0A453HN000.0A0A453HN00_AEGTS; Uncharacterized protein
STRINGTraes_4DS_35269C392.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48163758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.35e-82BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]