PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DS_12FDFA9F8.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 276aa    MW: 31244.1 Da    PI: 9.218
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DS_12FDFA9F8.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.93.3e-1725109797
                            .-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                     B3   7 psdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                            p d ++++ +++p +f+ ++ g k   s t+ le ++g++++v++  + ++++++l++GW+ Fv+an + e D+++F++ g+ +f  +
  Traes_4DS_12FDFA9F8.2  25 PMDRNSRHSMIIPESFV-NYfGWK--LSGTIELEAPNGNVYDVRV--TERRNKTFLRSGWEAFVDANYIVETDSLMFRYRGNCRF--N 105
                            6688999**********.552544..667****************..999999**************************999999..7 PP

                            EEEE CS
                     B3  94 vkvf 97 
                            v vf
  Traes_4DS_12FDFA9F8.2 106 VLVF 109
                            7766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.14E-2116114IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-2018114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.18319112IPR003340B3 DNA binding domain
CDDcd100171.47E-1820109No hitNo description
SMARTSM010191.7E-1122112IPR003340B3 DNA binding domain
PfamPF023626.9E-1625109IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MRKSCVCCKR YWTHLHGKVK CFVAPMDRNS RHSMIIPESF VNYFGWKLSG TIELEAPNGN  60
VYDVRVTERR NKTFLRSGWE AFVDANYIVE TDSLMFRYRG NCRFNVLVFH SSGCEKVVSC  120
ARMLTNISDQ EPSTNSRDIS TSFSDGNTHS SARGRSDDCQ SGSSGHRRKR PKKDAISSPS  180
EDSSGEDSPY EHESSKSEDT KRIGITPEHD DTDPYMMSLG ARLTQGQKKK VLEKVGAIAS  240
DLHIYVAVMN KTNVRRSLTF ATKYCDTYLR KGSRSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166173RRKRPKKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158256.11e-146B3 domain-containing protein Os03g0619600-like
TrEMBLA0A3B6JH330.0A0A3B6JH33_WHEAT; Uncharacterized protein
TrEMBLM8C8Y50.0M8C8Y5_AEGTA; B3 domain-containing protein
STRINGEMT307390.0(Aegilops tauschii)
STRINGTraes_4DS_12FDFA9F8.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-12B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]