PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4DS_0FB3F3EE9.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GRF

Protein Properties

Length: 591aa MW: 62898 Da PI: 6.8531

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4DS_0FB3F3EE9.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74.8	9.2e-24	201	244	2	45
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Traes_4DS_0FB3F3EE9.1 201 LEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 244 69***************************************986 PP
2	QLQ	61.1	3.1e-21	134	170	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKyLaan vP++L+++i++ Traes_4DS_0FB3F3EE9.1 134 GPFTPSQWMELEHQALIYKYLAANIAVPHNLVVPIRR 170 59*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	3.1E-12	134	170	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	2.9E-15	135	169	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	22.983	135	170	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.65	200	244	IPR014977	WRC domain
Pfam	PF08879	5.0E-20	202	243	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009624	Biological Process	response to nematode
GO:0048364	Biological Process	root development
GO:0048366	Biological Process	leaf development
GO:0061062	Biological Process	regulation of nematode larval development
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 591 aa Download sequence Send to blast
MDLGGVLMAA ADAGVGGGDL GMLGSRLLKH GRGNEADEHG WGGGRPASKQ ARVAGDSDAV 60 SEAVKAAAPY LLGTCSPGHG REKMLSFSSS QPASCPSAAQ AALPLYYGTP ASCSDQMEFV 120 ESQEREKRLS SVRGPFTPSQ WMELEHQALI YKYLAANIAV PHNLVVPIRR SVTSLYPSAY 180 FGSSTLGWGP FQLGYSGSAD LEPGRCRRTD GKKWRCSRDA VADQKYCERH MNRGRHRSRK 240 HVEGQPGHAA KAMPATAAAA AQPGALATGG GGGAPAGAAI CHEQQPLKNY AASTIDPCSL 300 QYNREMVSKQ QHECEQVQDS DTLSMLTSMS ARNTNAGSMF PFSKEHHNHN PFEVTSSRPD 360 YGLVSSDSLM SSPHSSLENV NLLTSQRALS SEQQSSLSLQ HFADWPRTPS QQGQGGGLSW 420 PDAEDMQAHQ RTQLSVSAVP MASSDLSSAS TSPIHEKLML SPLKLSREYS PIGLSVAATA 480 AVAKDEGEAN WMPMFRDSSM GGPLGEALNK NNGGNMEAKS YLSASLNLMT DAWDSSPLES 540 SPVGVLQRTA FGSVSSSTGS SPRQEYHGVY DGNPRDDLGS IVVNHPSIRL M

Sequence ? help Back to Top

Protein Sequence Length: 591 aa Download sequence Send to blast

MDLGGVLMAA ADAGVGGGDL GMLGSRLLKH GRGNEADEHG WGGGRPASKQ ARVAGDSDAV  60
SEAVKAAAPY LLGTCSPGHG REKMLSFSSS QPASCPSAAQ AALPLYYGTP ASCSDQMEFV  120
ESQEREKRLS SVRGPFTPSQ WMELEHQALI YKYLAANIAV PHNLVVPIRR SVTSLYPSAY  180
FGSSTLGWGP FQLGYSGSAD LEPGRCRRTD GKKWRCSRDA VADQKYCERH MNRGRHRSRK  240
HVEGQPGHAA KAMPATAAAA AQPGALATGG GGGAPAGAAI CHEQQPLKNY AASTIDPCSL  300
QYNREMVSKQ QHECEQVQDS DTLSMLTSMS ARNTNAGSMF PFSKEHHNHN PFEVTSSRPD  360
YGLVSSDSLM SSPHSSLENV NLLTSQRALS SEQQSSLSLQ HFADWPRTPS QQGQGGGLSW  420
PDAEDMQAHQ RTQLSVSAVP MASSDLSSAS TSPIHEKLML SPLKLSREYS PIGLSVAATA  480
AVAKDEGEAN WMPMFRDSSM GGPLGEALNK NNGGNMEAKS YLSASLNLMT DAWDSSPLES  540
SPVGVLQRTA FGSVSSSTGS SPRQEYHGVY DGNPRDDLGS IVVNHPSIRL M

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK376067	0.0	AK376067.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3113P04.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020187288.1	0.0	growth-regulating factor 6-like
Swissprot	Q6AWY3	0.0	GRF6_ORYSJ; Growth-regulating factor 6
TrEMBL	A0A453H9X7	0.0	A0A453H9X7_AEGTS; Uncharacterized protein
STRING	Traes_4DS_0FB3F3EE9.1	0.0	(Triticum aestivum)
STRING	Traes_4DS_0FB3F3EE91.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4290	35	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	1e-45	growth-regulating factor 2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Liu H, et al. OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4. Plant Physiol., 2014. 165(1): p. 160-74 [PMID:24596329] Gao F, et al. Blocking miR396 increases rice yield by shaping inflorescence architecture. Nat Plants, 2015. 2: p. 15196 [PMID:27250748]