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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DS_0FB3F3EE9.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GRF | ||||||||
Protein Properties | Length: 591aa MW: 62898 Da PI: 6.8531 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 74.8 | 9.2e-24 | 201 | 244 | 2 | 45 |
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Traes_4DS_0FB3F3EE9.1 201 LEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 244 69***************************************986 PP | |||||||
2 | QLQ | 61.1 | 3.1e-21 | 134 | 170 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKyLaan vP++L+++i++ Traes_4DS_0FB3F3EE9.1 134 GPFTPSQWMELEHQALIYKYLAANIAVPHNLVVPIRR 170 59*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 3.1E-12 | 134 | 170 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.9E-15 | 135 | 169 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.983 | 135 | 170 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.65 | 200 | 244 | IPR014977 | WRC domain |
Pfam | PF08879 | 5.0E-20 | 202 | 243 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0061062 | Biological Process | regulation of nematode larval development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 591 aa Download sequence Send to blast |
MDLGGVLMAA ADAGVGGGDL GMLGSRLLKH GRGNEADEHG WGGGRPASKQ ARVAGDSDAV 60 SEAVKAAAPY LLGTCSPGHG REKMLSFSSS QPASCPSAAQ AALPLYYGTP ASCSDQMEFV 120 ESQEREKRLS SVRGPFTPSQ WMELEHQALI YKYLAANIAV PHNLVVPIRR SVTSLYPSAY 180 FGSSTLGWGP FQLGYSGSAD LEPGRCRRTD GKKWRCSRDA VADQKYCERH MNRGRHRSRK 240 HVEGQPGHAA KAMPATAAAA AQPGALATGG GGGAPAGAAI CHEQQPLKNY AASTIDPCSL 300 QYNREMVSKQ QHECEQVQDS DTLSMLTSMS ARNTNAGSMF PFSKEHHNHN PFEVTSSRPD 360 YGLVSSDSLM SSPHSSLENV NLLTSQRALS SEQQSSLSLQ HFADWPRTPS QQGQGGGLSW 420 PDAEDMQAHQ RTQLSVSAVP MASSDLSSAS TSPIHEKLML SPLKLSREYS PIGLSVAATA 480 AVAKDEGEAN WMPMFRDSSM GGPLGEALNK NNGGNMEAKS YLSASLNLMT DAWDSSPLES 540 SPVGVLQRTA FGSVSSSTGS SPRQEYHGVY DGNPRDDLGS IVVNHPSIRL M |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK376067 | 0.0 | AK376067.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3113P04. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020187288.1 | 0.0 | growth-regulating factor 6-like | ||||
Swissprot | Q6AWY3 | 0.0 | GRF6_ORYSJ; Growth-regulating factor 6 | ||||
TrEMBL | A0A453H9X7 | 0.0 | A0A453H9X7_AEGTS; Uncharacterized protein | ||||
STRING | Traes_4DS_0FB3F3EE9.1 | 0.0 | (Triticum aestivum) | ||||
STRING | Traes_4DS_0FB3F3EE91.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4290 | 35 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 1e-45 | growth-regulating factor 2 |
Publications ? help Back to Top | |||
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