PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DL_F6ADA799C.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 115aa MW: 13514.2 Da PI: 6.5534 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.2 | 3.7e-20 | 64 | 115 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ eq+++Le+ Fe +++++ e+++++A+ lgL rqV vWFqNrRa++k Traes_4DL_F6ADA799C.1 64 RRLALEQVRALERSFETDNKLDPERKARIARDLGLHPRQVAVWFQNRRARWK 115 467789*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 89.3 | 4.7e-29 | 62 | 115 | 2 | 55 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtk 55 kkrrl+ eqv++LE+sFe+++kL+perK+++ar+Lgl+prqvavWFqnrRAR+k Traes_4DL_F6ADA799C.1 62 KKRRLALEQVRALERSFETDNKLDPERKARIARDLGLHPRQVAVWFQNRRARWK 115 9****************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.63E-18 | 58 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.4E-13 | 60 | 115 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.20E-14 | 62 | 115 | No hit | No description |
PROSITE profile | PS50071 | 16.633 | 62 | 115 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.0E-17 | 63 | 115 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-20 | 69 | 115 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.0E-5 | 88 | 97 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 92 | 115 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.0E-5 | 97 | 113 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
MKRQIKRPTR SQESPEPGEK LAFAEKENLL AAYMEHDEPE LAEADEEEEE EERAMSCGLG 60 GKKRRLALEQ VRALERSFET DNKLDPERKA RIARDLGLHP RQVAVWFQNR RARWK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353965 | 1e-161 | AK353965.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1004B20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020190062.1 | 3e-75 | homeobox-leucine zipper protein HOX13-like | ||||
Swissprot | A2XDD6 | 1e-35 | HOX13_ORYSI; Homeobox-leucine zipper protein HOX13 | ||||
TrEMBL | A0A3B6JPW5 | 5e-75 | A0A3B6JPW5_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453IZ72 | 3e-75 | A0A453IZ72_AEGTS; Uncharacterized protein | ||||
STRING | Traes_4AL_99A941299.1 | 2e-74 | (Triticum aestivum) | ||||
STRING | Traes_4DL_F6ADA799C.1 | 5e-77 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4283 | 31 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22430.1 | 5e-25 | homeobox protein 6 |
Publications ? help Back to Top | |||
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