PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_4DL_F0BE36C9D.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 357aa MW: 38752.8 Da PI: 9.2451 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.6 | 4.8e-53 | 9 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdeel+ +yL+++++++++++ ++i++vdiyk++Pw Lp+k++ +++ewyfF++rd+ky++g r+nra+ sgyWkatg+ Traes_4DL_F0BE36C9D.1 9 LPPGFRFHPTDEELILHYLRNRAAESPCPV-SIIADVDIYKFDPWALPSKASYGDREWYFFTPRDRKYPNGVRPNRAAGSGYWKATGT 95 79****************************.89***************988899********************************** PP NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 dk++ ++ +ge vg+kk Lvfykgr pkg kt+W+mheyrl Traes_4DL_F0BE36C9D.1 96 DKPIRCSaTGESVGVKKALVFYKGRPPKGIKTNWIMHEYRL 136 ****99878999***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-63 | 5 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.385 | 9 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-27 | 10 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 357 aa Download sequence Send to blast |
MIMSDPAMLP PGFRFHPTDE ELILHYLRNR AAESPCPVSI IADVDIYKFD PWALPSKASY 60 GDREWYFFTP RDRKYPNGVR PNRAAGSGYW KATGTDKPIR CSATGESVGV KKALVFYKGR 120 PPKGIKTNWI MHEYRLAAAD GHAGNTYRPM KFRNASMRLD DWVLCRIYKK TSQVSPMAVP 180 PLSDHELDEP SGAGACPMSS AGMIMQGGAG GYPLQAAASG TQRMPKIPSI SELLNEYSLA 240 QLFDDSGHAL MARHDQHAAL FGHPIMGQFH VNSGGNNMSQ LGQMDSSAST SVAGEGAAGK 300 RKRPSEDGDH NRPTNQPATA VTGKKPNSSC LGATTFQTGN NTLQGSLGQG HQTLLHF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-71 | 9 | 172 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-71 | 9 | 172 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-71 | 9 | 172 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-71 | 9 | 172 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-71 | 9 | 172 | 20 | 170 | NAC domain-containing protein 19 |
3swm_B | 1e-71 | 9 | 172 | 20 | 170 | NAC domain-containing protein 19 |
3swm_C | 1e-71 | 9 | 172 | 20 | 170 | NAC domain-containing protein 19 |
3swm_D | 1e-71 | 9 | 172 | 20 | 170 | NAC domain-containing protein 19 |
3swp_A | 1e-71 | 9 | 172 | 20 | 170 | NAC domain-containing protein 19 |
3swp_B | 1e-71 | 9 | 172 | 20 | 170 | NAC domain-containing protein 19 |
3swp_C | 1e-71 | 9 | 172 | 20 | 170 | NAC domain-containing protein 19 |
3swp_D | 1e-71 | 9 | 172 | 20 | 170 | NAC domain-containing protein 19 |
4dul_A | 1e-71 | 9 | 172 | 17 | 167 | NAC domain-containing protein 19 |
4dul_B | 1e-71 | 9 | 172 | 17 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK251058 | 0.0 | AK251058.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf97a05, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020162550.1 | 0.0 | NAC transcription factor NAM-B1-like | ||||
TrEMBL | A0A3B6JJ56 | 0.0 | A0A3B6JJ56_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453I6P2 | 0.0 | A0A453I6P2_AEGTS; Uncharacterized protein | ||||
STRING | Traes_4DL_F0BE36C9D.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1237 | 36 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G04070.1 | 2e-84 | NAC domain containing protein 47 |
Publications ? help Back to Top | |||
---|---|---|---|
|