PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_F064084A9.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 838aa    MW: 91591.5 Da    PI: 5.6845
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_F064084A9.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.25.9e-182784356
                           --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
               Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56
                           k  ++t+eq+e+Le++++ +++p+ ++r++L +++    +++ rq+kvWFqNrR ++k
  Traes_4DL_F064084A9.2 27 KYVRYTPEQVETLERVYADCPKPTSSRRQQLLRECpilaNIEARQIKVWFQNRRCRDK 84
                           5678***************************************************998 PP
2START154.39.8e-491653722204
                            HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT. CS
                  START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg. 88 
                            +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++++ve+l d++  W +++++ e+  v+  + 
  Traes_4DL_F064084A9.2 165 IAEETLTEFLSKATGTAIEWVQMPGMKPGPDSVGIVAISHGCRGVAARACGLVNLEPTKVVEILKDRP-SWFRDCRSLEVFTVLPGAn 251
                            789*******************************************************9999988888.***************9878 PP

                            .EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
                  START  89 .galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvd 171
                             g+++l +++l+a+++lvp Rdf+++Ry+   ++g++v++++S++     p+    +++vRae+lpSg+l++p+++g+s v++v+h +
  Traes_4DL_F064084A9.2 252 gGTIELVYTQLYAPTTLVPaRDFWTLRYTTIVEDGSLVVCERSLSGSGGGPSaasAQQFVRAEMLPSGYLVRPCDGGGSIVHIVDHLE 339
                            8********************************************9999999898899****************************** PP

                            --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                  START 172 lkgrlphwllrslvksglaegaktwvatlqrqc 204
                             +++ ++++lr+l++s+++ ++k+++a+l++ +
  Traes_4DL_F064084A9.2 340 FEAWNIPEVLRPLYESSRVVAQKMTTAALRHIR 372
                            *****************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.2E-18784IPR009057Homeodomain-like
PROSITE profilePS5007115.0622286IPR001356Homeobox domain
SMARTSM003892.0E-152490IPR001356Homeobox domain
CDDcd000866.93E-162784No hitNo description
SuperFamilySSF466891.11E-142786IPR009057Homeodomain-like
PfamPF000461.9E-152884IPR001356Homeobox domain
PROSITE profilePS5084826.466155383IPR002913START domain
CDDcd088751.23E-71159375No hitNo description
SuperFamilySSF559613.85E-36164376No hitNo description
Gene3DG3DSA:3.30.530.204.0E-19164350IPR023393START-like domain
SMARTSM002341.5E-36164374IPR002913START domain
PfamPF018522.0E-46165372IPR002913START domain
PfamPF086701.4E-46695837IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    Send to blast
MAAAMAMRGG SSDGGGSDRG AGMDSGKYVR YTPEQVETLE RVYADCPKPT SSRRQQLLRE  60
CPILANIEAR QIKVWFQNRR CRDKLRKESS RLESVNRKVS AMNKLLMEEN ERLQKQVSQL  120
VHENAQVRQQ LQNTSMANDA SCESNVTTPQ NPIRDASNPS GLLSIAEETL TEFLSKATGT  180
AIEWVQMPGM KPGPDSVGIV AISHGCRGVA ARACGLVNLE PTKVVEILKD RPSWFRDCRS  240
LEVFTVLPGA NGGTIELVYT QLYAPTTLVP ARDFWTLRYT TIVEDGSLVV CERSLSGSGG  300
GPSAASAQQF VRAEMLPSGY LVRPCDGGGS IVHIVDHLEF EAWNIPEVLR PLYESSRVVA  360
QKMTTAALRH IRQIAQETSG EVVYALGRQP AVLRTFSQRL SRGFNDAISG FNDDGWSIMA  420
GDGIEDVVVA CNSTKKIRNV SNGVNAFEAL GGTICAKASM LLQSVPPAIL VRFLREHRSE  480
WADYSMDAYL ASAVKTSTCS FPGLRPMRFS GSQIIMPLAH TVENEEILEV VRLEGQPLSH  540
DEVLLSRDID MLQLCTGIDE KSVGSSFQLV FAPIDDFPDD APLVSSGFRV IPLDMKTDVV  600
SSGRTLDLAS SLEVGSTAAQ ASGASPDDCN VRSVLTIAFQ FPYELHLQDS VAAMARQYVR  660
SIVSAVQRVS IAISPSQSGL NAGQRILSGL PEAATLARWI CQSYHYHLGV ELLTQSDVAG  720
EALLKMLWHY QDAILCCSFK EVPVFTFANK AGLDMLETSL VALQDLTLDK IFDEPGRKAL  780
FSEISKLVEE GHVYLPSGVC MSGMGRHVSF DQAVAWKVLG EDSRVHCLAL CFVNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162053.10.0homeobox-leucine zipper protein HOX10
SwissprotA2XBL90.0HOX10_ORYSI; Homeobox-leucine zipper protein HOX10
TrEMBLA0A3B6JQ360.0A0A3B6JQ36_WHEAT; Uncharacterized protein
STRINGTraes_4DL_F064084A9.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]