PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4DL_AEF5AB905.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 422aa    MW: 47453.8 Da    PI: 9.9188
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4DL_AEF5AB905.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.71.5e-161702561099
                            HHHTT-EE--HHH.HTT.---..--SEEEEEE..TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                     B3  10 vlksgrlvlpkkfaeeh.ggkkeesktltled..esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                            + +s+rl+lp kf++   +g k++  +++l+    + r W+vk+  +   g+++l++GW++F++a+gL+ g f+vF++dg  ++ l+v
  Traes_4DL_AEF5AB905.2 170 N-SSSRLRLPDKFTRVLlDGGKPQ--EVKLREagHRRRFWDVKVVLDAD-GHMYLGRGWEQFARAHGLRLGYFLVFSYDG--DAVLTV 251
                            4.5567********7779444445..5666552266699*****65555.5778***********************988..555699 PP

                            EEE-S CS
                     B3  95 kvfrk 99 
                            kvf+ 
  Traes_4DL_AEF5AB905.2 252 KVFDV 256
                            99985 PP
2B338.91.6e-123223961286
                            HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                     B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                            +++ l +p +f  +hg+ ++++++l++   +g+sW v l++   +++++r  ++ GW +F+ +n L +gD++ F+  +
  Traes_4DL_AEF5AB905.2 322 QEQYLNVPVDFQLAHGYAERSKVELRM---RGKSWLVHLKHnpkTGGRSRASFRYGWHQFCVDNALGVGDTCFFRALR 396
                            556789999**99**999888766664...67*******997666666669***********************9554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.944160257IPR003340B3 DNA binding domain
CDDcd100174.94E-20161255No hitNo description
SMARTSM010191.4E-17163257IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.1E-18163259IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.63E-18164263IPR015300DNA-binding pseudobarrel domain
PfamPF023623.5E-14170255IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.9E-21307417IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0044309417IPR003340B3 DNA binding domain
CDDcd100179.82E-9309399No hitNo description
SuperFamilySSF1019367.06E-13311397IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.983311417IPR003340B3 DNA binding domain
PfamPF023628.1E-10322397IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MGEKWMLPIY VKRDQMDATI YCRPSLSLPE PIAVRHVRAH CRPALSHISI SRWRGQEVYP  60
GPVGGIQRSE AFSIYHRCTF ERRGRGRRRK EEEEGFATWH GIHGIVGSFF FLFLPLPLAL  120
PSSIASSSLS TLAASRCRER GGRHRRLLSA TPLRPGEMEG FEFFQIILDN SSSRLRLPDK  180
FTRVLLDGGK PQEVKLREAG HRRRFWDVKV VLDADGHMYL GRGWEQFARA HGLRLGYFLV  240
FSYDGDAVLT VKVFDVSMCR RHYQHDGDTS SGSSSDGDSG SSNTSDGGGG GNNWSLAEMD  300
VEDGPTGQFS AMLRKCNLGM KQEQYLNVPV DFQLAHGYAE RSKVELRMRG KSWLVHLKHN  360
PKTGGRSRAS FRYGWHQFCV DNALGVGDTC FFRALRQGSA GGGGEDHLLK VEVRKRDGSF  420
LV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18190RRGRGRRRKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168607.10.0B3 domain-containing protein Os03g0212300-like
SwissprotQ10Q264e-76Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBLA0A3B6JN640.0A0A3B6JN64_WHEAT; Uncharacterized protein
STRINGTraes_4DL_AEF5AB905.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.12e-17B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]