PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DL_ADB23D42F.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 233aa MW: 25766.2 Da PI: 7.6626 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.8 | 1.6e-15 | 23 | 69 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 + WT+eEd+ll + v++ Gg+ +W++I r ++ gR k+c++rw ++l Traes_4DL_ADB23D42F.1 23 KMWTKEEDDLLREQVRRCGGPhNWDSICRGLP-GRNSKSCRLRWCQHL 69 67******************************.***********9986 PP | |||||||
2 | Myb_DNA-binding | 46.5 | 8.5e-15 | 78 | 120 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T eEd l+v++ + +G++ W+tIa+ + gRt++ +k+rw+++ Traes_4DL_ADB23D42F.1 78 PFTIEEDMLIVKYQATYGNR-WSTIAEFLS-GRTDNAVKNRWNSV 120 89******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.971 | 17 | 73 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.61E-27 | 21 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-11 | 21 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-13 | 22 | 69 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.60E-13 | 25 | 69 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-15 | 25 | 74 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-12 | 75 | 123 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-12 | 78 | 121 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.75E-11 | 78 | 121 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-18 | 78 | 122 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.275 | 78 | 125 | IPR017930 | Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MMPTSGNDAG ACDGDSSPHG VKKMWTKEED DLLREQVRRC GGPHNWDSIC RGLPGRNSKS 60 CRLRWCQHLD PRVEAVKPFT IEEDMLIVKY QATYGNRWST IAEFLSGRTD NAVKNRWNSV 120 LRKRQEHAPS QQGQTRPWAP SAARQAAGPE VTPRCLPLFP GSAEEVPEAD TCAAARKCLD 180 LFPLAPGDIR ANAAAEAPPG DMTCGAGDPL TELRLWPAPR VVFDVMPLQA YRM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-24 | 25 | 124 | 30 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF951919 | 0.0 | JF951919.1 Triticum aestivum clone TaMYB21 R2R3-MYB protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020148042.1 | 1e-173 | transcription factor MYB44-like | ||||
Refseq | XP_020155292.1 | 1e-173 | transcription factor MYB44-like | ||||
TrEMBL | A0A3B6JJN3 | 1e-172 | A0A3B6JJN3_WHEAT; Uncharacterized protein | ||||
STRING | Traes_4DL_ADB23D42F.1 | 1e-173 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4960 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50060.1 | 4e-35 | myb domain protein 77 |
Publications ? help Back to Top | |||
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