PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DL_A9DA4DCF1.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 945aa MW: 107270 Da PI: 6.9641 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 44.4 | 5.7e-14 | 83 | 166 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 k+Y++YA + GFs ++ ks++ ++g + + + Cs++g+ + + +r++ +++C a++ +k+++d ++++ +l+HnH+ Traes_4DL_A9DA4DCF1.2 83 KYYKQYAADSGFSAVTLKSSYL-KSGVCRRLVLGCSRSGRGRANACY-----LSRETAKINCPARISLKLRQDRWLHIDDAKLDHNHP 164 69***********999999887.7888***************99998.....89999**************99999************ PP FAR1 89 la 90 l+ Traes_4DL_A9DA4DCF1.2 165 LN 166 96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.6E-11 | 83 | 166 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 3.0E-24 | 270 | 363 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.137 | 557 | 593 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.7E-5 | 568 | 595 | IPR006564 | Zinc finger, PMZ-type |
Pfam | PF04434 | 3.6E-6 | 570 | 589 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 945 aa Download sequence Send to blast |
EAPIEADGKS SEPPGNGSLP KIAEKSQDSG GNPGTELPPL HQGKEVILVD DNDSGQEDGG 60 GAKVDENAPR TGLRFKTYDD ALKYYKQYAA DSGFSAVTLK SSYLKSGVCR RLVLGCSRSG 120 RGRANACYLS RETAKINCPA RISLKLRQDR WLHIDDAKLD HNHPLNQSSD SPMSCYKKLT 180 DAKSVENGSR LKGRRNVPIA DKEQGNFTEI GRLKFGEGDD EQIQKFFGSM QNKNPNFFYL 240 VDLDKQGRLR NLFWSDARSQ AAHEYFGHDV VYFDTSYLTE KYDLPLVFFT GMNNHGQPVL 300 FGTGLLSDLS AESYTWLFRA FLACMKGCYP DAIITEHYNA ILDAVREVFS QVKHRLCLYR 360 IMRDVAENLK AHAEFKTIKR ALKKVTYGSL KPPEFEADWK KVIEEHGLAG NECLSSLHEH 420 RQLWAPAYLK DKFWAGMSVS QRGESVASYY DGFVYPKTSL KQFFSKYEMI LENKYKKELQ 480 ADEESSHRTP LTVTKFYMEE QLAKAYTINM FRKFQEELKA TMYCDGMPSK VDGPFVTFEV 540 KECSYMEDGK ETESRTYEVY FCKEGLIVEC ECGFFQFTGI LCRHALSVFK LHDMFEIPSR 600 YVLDRWKRDY KKLHALAHYP NEMLLGDTVE RHDYLSTQCR QVLNLGFISE SRYLVALKLL 660 REAERALLDD GQPARDRQPR LLSFEADAPE NGQGLFSSQF PEGEKNSLST NAKHPGRPAK 720 KVAETNPDAV LRSNKEQDFL RSSFVPTETN MIQGTSSGSH LESPDMGVPG SIHLMEGISP 780 NLTFGPHFGM DVSHQHQLPN QPRMMPNNFM QVQADPHVFG NQWAYNPTMQ VCPHTNVYPF 840 FLAASKIIIQ CFKLHATPCL CPCSHFLLHG PCLRPCSDME FHQSMDLSNI FGLLVATQTH 900 IVQGFSCSSF SSLIYYDFQQ MCTIINLCSL SNVIITHIEH LKNYC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020157633.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6-like | ||||
TrEMBL | A0A453JBJ9 | 0.0 | A0A453JBJ9_AEGTS; Uncharacterized protein | ||||
STRING | Traes_4DL_A9DA4DCF1.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 1e-121 | FAR1-related sequence 6 |
Publications ? help Back to Top | |||
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