PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DL_5B3B57371.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GRAS | ||||||||
Protein Properties | Length: 254aa MW: 26998 Da PI: 4.4813 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 113.7 | 2.3e-35 | 118 | 254 | 1 | 128 |
GRAS 1 lvelLlecAeavss..gdlelaqalLarlsel.aspdgd....pmqRlaayfteALaarlar..svselykalppsetseknsseela 79 l +lL+++Aea+s ++ ela+ +L rl+e+ +s +g+ +m+Rlaa+ft AL+ l + sv +++++ ++ +++++++ ++l+ Traes_4DL_5B3B57371.1 118 LLHLLMAAAEALSGphKSRELARVILVRLKEMvSSTSGNagasNMERLAAHFTDALQGLLDGshSVAGTSRQAAMAASHHHSTGDVLT 205 579**********8557777************555555566669****************99556677888888888888889***** PP GRAS 80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaL 128 a+++++++sP++kf+h+taNqaIleav+g++rvHi+D+d+ +G+QW++L Traes_4DL_5B3B57371.1 206 AFQMLQDMSPYMKFGHFTANQAILEAVAGDRRVHIVDYDLAEGIQWASL 254 ***********************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 24.861 | 92 | 254 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.1E-33 | 118 | 254 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MEDVVGDLEI SGYSSISTSP SSSLDDGMGL YGWNALSPVA DWGLFCSDDG GHDLHGLIES 60 MLCDDALIGK PDEHPTMFTD GPCYSNASDP SSTTTTNPGT PVQHDDTPDC NPEKGLRLLH 120 LLMAAAEALS GPHKSRELAR VILVRLKEMV SSTSGNAGAS NMERLAAHFT DALQGLLDGS 180 HSVAGTSRQA AMAASHHHST GDVLTAFQML QDMSPYMKFG HFTANQAILE AVAGDRRVHI 240 VDYDLAEGIQ WASL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 6e-14 | 163 | 254 | 41 | 127 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC135206 | 1e-141 | AC135206.3 Oryza sativa Japonica Group chromosome 3 clone OJ1041F02, complete sequence. | |||
GenBank | AP014959 | 1e-141 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020151677.1 | 0.0 | nodulation-signaling pathway 2 protein-like | ||||
TrEMBL | A0A3B6JJ26 | 0.0 | A0A3B6JJ26_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A481S1C6 | 0.0 | A0A481S1C6_WHEAT; Nodulation-signaling pathway 2 protein (Fragment) | ||||
STRING | Traes_4DL_5B3B57371.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7580 | 31 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08250.1 | 5e-36 | GRAS family protein |
Publications ? help Back to Top | |||
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