PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4DL_58F3F93CA.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 241aa MW: 27097.9 Da PI: 8.4663 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 51.9 | 1.4e-16 | 140 | 230 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k +++s+v + +l lp +f++++ k ++ t+tl de+ +++e k+ ++++ l++GW +F+ ++ +++gD+ vF+l++ + Traes_4DL_58F3F93CA.1 140 FMKRMLHSHVVRGFWLGLPSHFCDTYLPK--NDCTITLVDEKDEEFESKY--LAYKKG--LSGGWAGFALDHVIRDGDSTVFQLIKPT 221 8999********************99533..4459***************..555555..9***********************9867 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +f +v+++r+ Traes_4DL_58F3F93CA.1 222 TF--KVHIIRA 230 77..9999885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.9E-19 | 131 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.67E-22 | 133 | 229 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.07E-25 | 138 | 229 | No hit | No description |
SMART | SM01019 | 3.7E-16 | 140 | 231 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.321 | 140 | 231 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.5E-15 | 140 | 230 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MAIEKKGMSA YEAERERTVE ENKRKMEALN LRHLSAAVAP KTPSPMKHKR RRIIEAATPV 60 PSPPRRSRRL AHIPEVKYAD ACAEVGEDSE RVGRWSPRRR SGSIYLAGGG GGPISMKARM 120 EAASKAEELE SQLDPEFPSF MKRMLHSHVV RGFWLGLPSH FCDTYLPKND CTITLVDEKD 180 EEFESKYLAY KKGLSGGWAG FALDHVIRDG DSTVFQLIKP TTFKVHIIRA AVGDDDNEEM 240 E |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 48 | 52 | KRRRI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK249804 | 0.0 | AK249804.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf54k19, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020149937.1 | 1e-179 | B3 domain-containing protein Os03g0184500-like | ||||
Swissprot | Q10QS9 | 1e-122 | Y3845_ORYSJ; B3 domain-containing protein Os03g0184500 | ||||
TrEMBL | A0A3B6JMZ4 | 1e-178 | A0A3B6JMZ4_WHEAT; Uncharacterized protein | ||||
STRING | Traes_4DL_58F3F93CA.1 | 1e-179 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1756 | 38 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 8e-47 | B3 family protein |
Publications ? help Back to Top | |||
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