PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4DL_25E90F954.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GRAS

Protein Properties

Length: 234aa MW: 25173.6 Da PI: 5.1363

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4DL_25E90F954.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	118.2	1e-36	3	186	198	373
GRAS 198 pgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadh..nse........sFlerflealeyysalfdsleak 274 +gE+l+ n++l+ +v + ++L + sl kvv+vve+e + n+e F+ rf+e l+ ysa+ dslea+ Traes_4DL_25E90F954.1 3 KGETLVANCILHQAAAT-TTVRRPTgSVASFLTGMASLGVKVVTVVEEEGEAekNEEeasdaaagGFVGRFMEELHRYSAVWDSLEAG 89 69*****99655554.333333347899**************97763255599999999******************* PP GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlg 361 +p++s+ r vEr++l+++i +v+ + + + e + W e+++ +GF+ vpls ++ +qa+lll ++ dgy+vee + +vlg Traes_4DL_25E90F954.1 90 FPTQSRVRGLVERVILAPNIAGAVSRAYRG--TDGEGRRGWGEWMRGSGFEMVPLSCFNHSQARLLLGLFN-DGYTVEETrPNKIVLG 174 *********************99887..899999*****************************.**87367788 PP GRAS 362 WkdrpLvsvSaW 373 Wk r+L+s+S+W Traes_4DL_25E90F954.1 175 WKARRLLSASVW 186 ************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	17.854	1	167	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.5E-34	3	186	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MVKGETLVAN CILHQAAATT TVRRPTGSVA SFLTGMASLG VKVVTVVEEE GEAEKNEEEA 60 SDAAAGGFVG RFMEELHRYS AVWDSLEAGF PTQSRVRGLV ERVILAPNIA GAVSRAYRGT 120 DGEGRRGWGE WMRGSGFEMV PLSCFNHSQA RLLLGLFNDG YTVEETRPNK IVLGWKARRL 180 LSASVWAPLP LSVPSSPAEG VCQPMGMAPA SGGFGRTEYD YVDSFLVEPA YALI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	8e-21	26	188	228	380	Protein SCARECROW
5b3h_A	8e-21	26	188	227	379	Protein SCARECROW
5b3h_D	8e-21	26	188	227	379	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269\|PubMed:15961668}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269\|PubMed:15961668}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020163850.1	1e-169	nodulation-signaling pathway 2 protein-like
Swissprot	Q5NE24	3e-55	NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBL	A0A3B6JJ26	1e-166	A0A3B6JJ26_WHEAT; Uncharacterized protein
TrEMBL	A0A453IG16	1e-167	A0A453IG16_AEGTS; Uncharacterized protein
STRING	Traes_4DL_25E90F954.1	1e-170	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7580	31	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G08250.1	3e-25	GRAS family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Tang H, et al. An improved genome release (version Mt4.0) for the model legume Medicago truncatula. BMC Genomics, 2014. 15: p. 312 [PMID:24767513]