PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BS_DCA6E2BE0.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 547aa    MW: 58730.3 Da    PI: 4.5592
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BS_DCA6E2BE0.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS349.45.6e-1071785473374
                   GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                            + Ll+c +a ++ + +la a La+++  a+++gdp +R+a+yf  ALa+rl     + +++l++ ++++  s+e++  +k++++++P+
  Traes_4BS_DCA6E2BE0.2 178 QSLLACSRAAAA-NPALAAAELAKVRAAATESGDPAERVAFYFSDALARRLPC---GGAASLETASDARLASDEVTLCYKTLNDACPY 261
                            7899**998776.89999999******************************98...5556677777777779**************** PP

                   GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvp 175
                             kf+hltaNqaIlea+  ++++Hi+Df+i qG+QW+aLlqaLa+Rpeg+p ++Ri gv sp  g   + +l +t  rL++fA+ lgv+
  Traes_4BS_DCA6E2BE0.2 262 SKFAHLTANQAILEATGAATKIHIVDFGIVQGIQWAALLQALATRPEGKPsRIRISGVPSPYLGpqPAASLAATSARLRDFAQLLGVD 349
                            **********************************************887769********998898999******************* PP

                   GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
                            fef + + + +++l+ ++++v+p+E++aVn++lql++ll   ++++++ ++vL+l ksl P vv++ e e+++n++ F++rf++al+y
  Traes_4BS_DCA6E2BE0.2 350 FEFVP-LLRPVHELDQSDFSVDPDEVVAVNFMLQLYHLL---GDSDEPVRRVLRLAKSLGPAVVTLGEYEVSLNRAGFVDRFASALSY 433
                            *****.599******************************...66666777************************************** PP

                   GRAS 264 ysalfdsleaklpreseerikvErellgreivnvva.cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgy 349
                            y a+f+sl++ ++r+se+r+++Er ++g++i+ +v   ega+r+ r+   ++W++ +e +GF+pv+ls++a++qa+lll  ++ +  y
  Traes_4BS_DCA6E2BE0.2 434 YRAVFESLDVAMARDSEDRATLERCMFGERIRRAVGpPEGADRTDRMAGSAEWQALMEWCGFEPVRLSNYAESQAELLLWDYDsKYKY 521
                            ***********************************83699*******************************************77789 PP

                   GRAS 350 rveeesgslv.lgWkdrpLvsvSaWr 374
                            ++ e   +++ l W++rpL++vSaWr
  Traes_4BS_DCA6E2BE0.2 522 SLVELPPAFLsLAWEKRPLLTVSAWR 547
                            99999999988**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.715150525IPR005202Transcription factor GRAS
PfamPF035141.9E-104178547IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MAYMCADSGN LMAIAQQVIQ QQQQHNQQQQ RHHHHHLVPS PMPMPAAPVP PHAQIPGSLP  60
FGAAGSAAWP QAENFFSDVF GASAADAVFS DLAAGTDFDS DVWMESLIGD APVFQDSDLD  120
RLIFTTPPPP VAPPAEAEDA APQVENAPAS LPTVAAAAQA ACSSPGSPDA SCSAPILQSL  180
LACSRAAAAN PALAAAELAK VRAAATESGD PAERVAFYFS DALARRLPCG GAASLETASD  240
ARLASDEVTL CYKTLNDACP YSKFAHLTAN QAILEATGAA TKIHIVDFGI VQGIQWAALL  300
QALATRPEGK PSRIRISGVP SPYLGPQPAA SLAATSARLR DFAQLLGVDF EFVPLLRPVH  360
ELDQSDFSVD PDEVVAVNFM LQLYHLLGDS DEPVRRVLRL AKSLGPAVVT LGEYEVSLNR  420
AGFVDRFASA LSYYRAVFES LDVAMARDSE DRATLERCMF GERIRRAVGP PEGADRTDRM  480
AGSAEWQALM EWCGFEPVRL SNYAESQAEL LLWDYDSKYK YSLVELPPAF LSLAWEKRPL  540
LTVSAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A0.01735471375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (By similarity). Binds DNA in vitro (PubMed:27081181). {ECO:0000250|UniProtKB:A0A024B7I0, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:27081181}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3536540.0AK353654.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1001N07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150204.10.0scarecrow-like protein 4
SwissprotQ53K160.0SCL7_ORYSJ; SCARECROW-LIKE protein 7
TrEMBLA0A3B6IN470.0A0A3B6IN47_WHEAT; Uncharacterized protein
TrEMBLA0A446RSH20.0A0A446RSH2_TRITD; Uncharacterized protein
STRINGTraes_4BS_DCA6E2BE0.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85693748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-131GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Li S, et al.
    Crystal Structure of the GRAS Domain of SCARECROW-LIKE7 in Oryza sativa.
    Plant Cell, 2016. 28(5): p. 1025-34
    [PMID:27081181]