PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BS_AAE1439D4.7
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRF
Protein Properties Length: 404aa    MW: 44679 Da    PI: 8.9162
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BS_AAE1439D4.7genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC73.72.1e-23134178145
                    WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                            d+epgrCrRtDGKkWRCs+++++ +k+CErH++r+r+rsrk++e+
  Traes_4BS_AAE1439D4.7 134 DPEPGRCRRTDGKKWRCSKEAMAEHKYCERHINRNRHRSRKPVEN 178
                            79****************************************997 PP
2QLQ54.82.8e-1975110237
                    QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                            +FT++Q+++L++Q+l+yKyL+a++P+P+ Ll  i+k
  Traes_4BS_AAE1439D4.7  75 PFTPSQWMELEHQALIYKYLNAKAPIPSGLLISISK 110
                            8*****************************999975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.0E-1074110IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.0E-1375108IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.27775110IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.151134178IPR014977WRC domain
PfamPF088791.5E-19135177IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MELGQVLGFA PPATKDARSG GGFAQAAAAP CPYPSPFLDE QKMLSFSKAA APPSSGMDFG  60
RSNEQRLLLA RSKMPFTPSQ WMELEHQALI YKYLNAKAPI PSGLLISISK SFRPSSDRMP  120
WRPVYQGFTN ADSDPEPGRC RRTDGKKWRC SKEAMAEHKY CERHINRNRH RSRKPVENQT  180
RKNAKETPDA GSLSAAVSHG GCNKKAKAGD ELKPGSVSYW TDNLNRAMVS KARGSNPEDG  240
NSAPLLNSTN QQHTLSLFSQ LKQQSKPDKF SPAVDSESIS SNTVLKPWER SNQQSSKDVS  300
STTLHDRGCL QSVLQDFSMH KNESQKINAS VPSTFYSSTE GRHISCLASN MMQVQEDCIS  360
SSWEIPQGGP LGEILTNSKN TDDLTNKCES RSYGWLLSLD EHEM
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020196595.10.0growth-regulating factor 9-like
SwissprotQ9FRG80.0GRF9_ORYSJ; Growth-regulating factor 9
TrEMBLA0A096UR440.0A0A096UR44_WHEAT; Growth regulating factor 9-B1
TrEMBLA0A446RQ060.0A0A446RQ06_TRITD; Uncharacterized protein
STRINGTraes_4BS_AAE1439D4.70.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131242529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.13e-44growth-regulating factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]