PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4BS_A021316A5.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 155aa MW: 17311.3 Da PI: 7.7713 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.7 | 5.3e-19 | 21 | 109 | 5 | 99 |
-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 5 ltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 +t+ d+++++ +v+p +f+ ++ g k s t+ le ++g++++v + + ++++++l++GW+ Fv+an++ e+D+++F++ g+ +f Traes_4BS_A021316A5.1 21 FTQIDSHSRHSVVIPESFV-NYfGWK--LSGTIELEAPNGNVYDVGI--TERKNKTLLRSGWEAFVDANHIVENDSLMFRYRGSCRF- 102 5778999************.552544..667****************..999999**************************998888. PP .EEEEE-S CS B3 92 lvvkvfrk 99 +v vf++ Traes_4BS_A021316A5.1 103 -KVAVFDS 109 .9999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.12E-22 | 16 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.211 | 17 | 110 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.25E-19 | 18 | 108 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 3.0E-21 | 19 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.2E-12 | 20 | 110 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.0E-17 | 21 | 109 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
NSCECCKRYW AHLHGKVKCF FTQIDSHSRH SVVIPESFVN YFGWKLSGTI ELEAPNGNVY 60 DVGITERKNK TLLRSGWEAF VDANHIVEND SLMFRYRGSC RFKVAVFDSS GCEKVVSCAR 120 ILTNTSDQEP STNSADISTS FSDGNTPSSA RARSP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020152556.1 | 1e-101 | B3 domain-containing protein Os03g0619600-like | ||||
Swissprot | Q851W5 | 5e-44 | Y3204_ORYSJ; B3 domain-containing protein Os03g0620400 | ||||
TrEMBL | A0A446R650 | 1e-104 | A0A446R650_TRITD; Uncharacterized protein | ||||
TrEMBL | T1N5N7 | 1e-104 | T1N5N7_TRIUA; Uncharacterized protein | ||||
STRING | Traes_4BS_A021316A5.1 | 1e-113 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP585 | 31 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 4e-17 | B3 family protein |
Publications ? help Back to Top | |||
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