PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BS_2EE4988CD.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 440aa    MW: 46810.9 Da    PI: 5.9345
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BS_2EE4988CD.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS465.53.1e-142524361374
                   GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl...fs 85 
                            lv++Ll+cAeav+++++++a+al++++  la+++g +m+++aayf eALa+r++r        ++p+++s  +  ++++a+ l   f+
  Traes_4BS_2EE4988CD.1  52 LVHALLACAEAVQQENFSAAEALVKQIPLLAASQGGAMRKVAAYFGEALARRVFR--------FRPQPDS--SLLDAAFADLLhahFY 129
                            689****************************************************........5555555..34444444444456** PP

                   GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelg 173
                            e +P+lkf+h+taNqaIlea++g++rvH++Df+i+qG+QWpaLlqaLa Rp+gpps+R+Tgvg+p+++++++l+++g++La+fA++++
  Traes_4BS_2EE4988CD.1 130 ESCPYLKFAHFTANQAILEAFAGCRRVHVVDFGIKQGMQWPALLQALALRPGGPPSFRLTGVGPPQPDETDALQQVGWKLAQFAHTIR 217
                            **************************************************************************************** PP

                   GRAS 174 vpfefnvlvakrledleleeLrvkp.......gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFl 254
                            v+f+++ lva +l+dle+ +L+ +         E++aVn+v+++hrll+++++le+    vL +v+ ++P++v+vveqea+hns++Fl
  Traes_4BS_2EE4988CD.1 218 VDFQYRGLVAATLADLEPFMLQPEGeedpneePEVIAVNSVFEMHRLLAQPGALEK----VLGTVRAVRPRIVTVVEQEANHNSGTFL 301
                            *********************544444557789***********************....**************************** PP

                   GRAS 255 erflealeyysalfdsleak..............lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvp 328
                            +rf+e+l+yys++fdsle +              +p+++ +++++++++lgr+i+nvvacegaer+erhetl++Wr+rl++aGF++v+
  Traes_4BS_2EE4988CD.1 302 DRFTESLHYYSTMFDSLEGGssggpsevssgaaaAPAAAGTDQVMSEVYLGRQICNVVACEGAERTERHETLGQWRNRLGNAGFETVH 389
                            *****************98889**********9999999************************************************* PP

                   GRAS 329 lsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                            l+++a+kqa++ll+ ++ +dgy+vee++g+l+lgW++rpL+++SaWr
  Traes_4BS_2EE4988CD.1 390 LGSNAYKQASTLLALFAgGDGYKVEEKEGCLTLGWHTRPLIATSAWR 436
                            **********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.21326415IPR005202Transcription factor GRAS
PfamPF035141.1E-13952436IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006808Biological Processregulation of nitrogen utilization
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0010233Biological Processphloem transport
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MRTGGSSTSS SSSSSSLGGG GARSSVVEAA PPVAAAAGAP ALPVVQEAGI RLVHALLACA  60
EAVQQENFSA AEALVKQIPL LAASQGGAMR KVAAYFGEAL ARRVFRFRPQ PDSSLLDAAF  120
ADLLHAHFYE SCPYLKFAHF TANQAILEAF AGCRRVHVVD FGIKQGMQWP ALLQALALRP  180
GGPPSFRLTG VGPPQPDETD ALQQVGWKLA QFAHTIRVDF QYRGLVAATL ADLEPFMLQP  240
EGEEDPNEEP EVIAVNSVFE MHRLLAQPGA LEKVLGTVRA VRPRIVTVVE QEANHNSGTF  300
LDRFTESLHY YSTMFDSLEG GSSGGPSEVS SGAAAAPAAA GTDQVMSEVY LGRQICNVVA  360
CEGAERTERH ETLGQWRNRL GNAGFETVHL GSNAYKQAST LLALFAGGDG YKVEEKEGCL  420
TLGWHTRPLI ATSAWRLAAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-635943526378Protein SCARECROW
5b3h_A2e-635943525377Protein SCARECROW
5b3h_D2e-635943525377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. Acts as a negative regulator of GAMYB gene expression. {ECO:0000269|PubMed:12011349, ECO:0000269|PubMed:12011350, ECO:0000269|PubMed:12468736}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFM8789450.0FM878945.1 Triticum aestivum Rht-Ble gene for mutated DELLA protein.
GenBankFR6685860.0FR668586.2 Triticum aestivum rht-B1 gene, allele a.
GenBankFR7197320.0FR719732.1 Triticum aestivum rht-B1a gene for DELLA protein.
GenBankGQ4513350.0GQ451335.2 Triticum aestivum cultivar Xiaoyan 54 truncated DELLA protein RHT-B1b gene, complete cds.
GenBankJF9302780.0JF930278.1 Triticum aestivum DELLA protein (Rht-B1) gene, Rht-B1a allele, complete cds.
GenBankJF9302800.0JF930280.1 Triticum aestivum DELLA protein (Rht-B1) gene, Rht-B1e allele, complete cds.
GenBankJN8579700.0JN857970.1 Triticum aestivum mutant DELLA protein gene, complete cds.
GenBankJN8579710.0JN857971.1 Triticum aestivum mutant DELLA protein mRNA, complete cds.
GenBankKC6145990.0KC614599.1 Triticum aestivum cultivar landrace bio-material INRA:24185 haplotype Rht-B1a_1 DELLA protein (Rht-B1) gene, complete cds.
GenBankKC6146000.0KC614600.1 Triticum aestivum cultivar Palestinskaya bio-material INRA:24180 haplotype Rht-B1a_1 DELLA protein (Rht-B1) gene, complete cds.
GenBankKC6146010.0KC614601.1 Triticum aestivum cultivar Rouge de Marchissy bio-material INRA:06318 haplotype Rht-B1a_1 DELLA protein (Rht-B1) gene, complete cds.
GenBankKC6146100.0KC614610.1 Triticum aestivum cultivar Gaines bio-material JIC:814 haplotype Rht-B1a_8 DELLA protein (Rht-B1) gene, complete cds.
GenBankKC6146110.0KC614611.1 Triticum aestivum cultivar Squarehead's Master bio-material JIC:8551 haplotype Rht-B1a_8 DELLA protein (Rht-B1) gene, complete cds.
GenBankKC6146120.0KC614612.1 Triticum aestivum cultivar Xi19 bio-material NIAB EW11-3 haplotype Rht-B1a_8 DELLA protein (Rht-B1) gene, complete cds.
GenBankKC6146130.0KC614613.1 Triticum aestivum cultivar Norin10/Brevor-14 bio-material USDA:Cltr13253 haplotype Rht-B1b_1 truncated DELLA protein (Rht-B1) gene, Rht-B1b allele, complete cds.
GenBankKC6146140.0KC614614.1 Triticum aestivum cultivar Robigus bio-material NIAB EW66-3 haplotype Rht-B1b_1 truncated DELLA protein (Rht-B1) gene, Rht-B1b allele, complete cds.
GenBankKC6146150.0KC614615.1 Triticum aestivum cultivar Siete Cerros bio-material JIC:614 haplotype Rht-B1b_1 truncated DELLA protein (Rht-B1) gene, Rht-B1b allele, complete cds.
GenBankKC6146160.0KC614616.1 Triticum aestivum cultivar Soissons bio-material NIAB EW9 haplotype Rht-B1b_1 truncated DELLA protein (Rht-B1) gene, Rht-B1b allele, complete cds.
GenBankKC6146170.0KC614617.1 Triticum aestivum cultivar W7984 bio-material INRA:13812 haplotype Rht-B1b_1 truncated DELLA protein (Rht-B1) gene, Rht-B1b allele, complete cds.
GenBankKC7679250.0KC767925.1 Triticum aestivum cultivar Sumai 3 DELLA (Rht-B1) gene, Rht-B1a allele, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560731.10.0DELLA protein SLN1
SwissprotQ8W1270.0SLN1_HORVU; DELLA protein SLN1
TrEMBLA0A446R8M50.0A0A446R8M5_TRITD; Uncharacterized protein
TrEMBLA0A446R8N00.0A0A446R8N0_TRITD; Uncharacterized protein
STRINGTraes_4BS_2EE4988CD.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-179GRAS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]