PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4BS_20BE06923.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | TALE | ||||||||
Protein Properties | Length: 662aa MW: 69252.6 Da PI: 6.3744 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.9 | 1.9e-09 | 364 | 401 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Traes_4BS_20BE06923.2 364 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 401 664459******************************88 PP | |||||||
2 | BELL | 113.4 | 1.2e-36 | 220 | 291 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqelq+kk kL+++l+eV++rY+qy++q+ v ssFeavag gsa+ Yt+lAl++iSr+FrcL+daia+q+ Traes_4BS_20BE06923.2 220 ERQELQMKKGKLVNMLDEVEQRYRQYHQQMASVSSSFEAVAGAGSARTYTALALRTISRQFRCLRDAIASQV 291 79********************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.6E-53 | 144 | 289 | IPR006563 | POX domain |
Pfam | PF07526 | 2.6E-49 | 149 | 288 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.228 | 342 | 405 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-9 | 345 | 409 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.58E-13 | 345 | 406 | No hit | No description |
SuperFamily | SSF46689 | 3.55E-17 | 346 | 412 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.7E-29 | 348 | 411 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.6E-18 | 362 | 401 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009610 | Biological Process | response to symbiotic fungus | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010197 | Biological Process | polar nucleus fusion | ||||
GO:0010201 | Biological Process | response to continuous far red light stimulus by the high-irradiance response system | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 662 aa Download sequence Send to blast |
MAAYYHGGAG TDIHQAASDG LQTLYLMNPS YGTGGYGDAA PSGANMMLLN SAVSSMTPAS 60 FGGHQASPPP GQHFVGIPLQ VPPSGYNLWT PATTGIADVM SPPTQQAHGV SAVLSLSSRE 120 TPPVTVASIA GDEGRYHLGS TTAASQGQVV MNSKYLRAAQ ELLDEVVSVS KGVDDVDPKA 180 KSAVSVKKKE DSEGLSGGGG EEGASGAKGG APAPEMSTAE RQELQMKKGK LVNMLDEVEQ 240 RYRQYHQQMA SVSSSFEAVA GAGSARTYTA LALRTISRQF RCLRDAIASQ VRAASRALGE 300 DCDAEGLGGG LGGGPGVGSR LRYIDHQLRQ QRALQQLGMM QSSAWRPQRG LPERSVSILR 360 AWLFEHFLHP YPKDSDKIML AKQTGLTRSQ VSNWFINARV RLWKPMVEEM YLEETKEHQQ 420 QQDGGDDKGR PSGSGPAGGK SSSNADGVDD GTPRSMARAA AGAGTSEGGG AVQASLLELA 480 GEHQAHAGFY DEEGEDGGLR RGFKKARAAD LEQQPPAAFD FGALHHAQAA AAAAARQQHD 540 EVSHRELLMK FMESGGAAGA RDHHHQHQHD EDGAGGGYSL FAPGPYGQFG TDQSFAFPGA 600 GQHGGVSLTL GLPHGAGDQT AFLMGGGSSN GADSGGSGAA GYDMNMQTTK SFAAQLMRDF 660 VA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 3e-17 | 351 | 409 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 3e-17 | 351 | 409 | 5 | 63 | Homeobox protein Meis2 |
5bng_A | 2e-17 | 351 | 409 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 2e-17 | 351 | 409 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK354639 | 0.0 | AK354639.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1009H02. | |||
GenBank | AK355078 | 0.0 | AK355078.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1015J22. | |||
GenBank | AK366536 | 0.0 | AK366536.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2043O18. | |||
GenBank | AK374345 | 0.0 | AK374345.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3061L07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020178285.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_020178286.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
TrEMBL | A0A3B6IM79 | 0.0 | A0A3B6IM79_WHEAT; Uncharacterized protein | ||||
STRING | Traes_4BS_20BE06923.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4816 | 37 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 2e-84 | BEL1-like homeodomain 1 |
Publications ? help Back to Top | |||
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