PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4BS_1281828D6.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GeBP | ||||||||
Protein Properties | Length: 395aa MW: 42079.7 Da PI: 6.352 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 83.2 | 3.8e-26 | 74 | 168 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkif 89 +fqr+wse+De+ +LqGl+ + +g d++ fy+ +++s+ +++sql+eK+rrLK+K ++ +++++g +p+ ++hd++++ Traes_4BS_1281828D6.2 74 KFQRIWSESDELRFLQGLLGC-GAQGLVFPRDLNVFYDRFSESMPQPYTRSQLSEKLRRLKNKHRNVASRVARGLDPARLAPHDRDVL 160 79*******************.556878888********************************************************* PP DUF573 90 elskkiWg 97 +l++++W+ Traes_4BS_1281828D6.2 161 HLCSRLWD 168 *******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 3.6E-24 | 75 | 168 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MASDQTLPLP PLLLPSNPNQ IPTPTPTAPH PTPSPASAAR KLPIKRRSPP RPSSSPSSSA 60 GAASSGQGQN PPFKFQRIWS ESDELRFLQG LLGCGAQGLV FPRDLNVFYD RFSESMPQPY 120 TRSQLSEKLR RLKNKHRNVA SRVARGLDPA RLAPHDRDVL HLCSRLWDPA NAATSPFAAA 180 AAPASSLGNK RRRSNPAVVP PQTLDVPAPS GDSNSHGYNG IGSSTPGATA FPDENGAEDV 240 MYLEQESGHH LYFDDGAAFV ADGNLDGITL DGIALDQAET MAVLTDVGDN GVVAGDNGVV 300 GNDAAPQNAV NNGGNSQNGN CNVLLPHSSE HRMARAVLDV FEECLREAKA DGIVNGGNAQ 360 ESELARRWRA QRIDELDVLS RRLRLIIEDA TAAGH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373195 | 0.0 | AK373195.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3023H08. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020194923.1 | 0.0 | probable transcription factor At3g04930 | ||||
TrEMBL | A0A3B6IMR4 | 0.0 | A0A3B6IMR4_WHEAT; Uncharacterized protein | ||||
STRING | Traes_4BS_1281828D6.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8695 | 32 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04930.2 | 2e-12 | DNA-binding storekeeper protein-related transcriptional regulator |
Publications ? help Back to Top | |||
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