PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4BL_F1BECD544.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 328aa MW: 37091.8 Da PI: 7.5715 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 154.1 | 6.4e-48 | 31 | 165 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 pG+rFhPtdeelv++yL++kv+gk+l++ evi+e+diyk++PwdLp ++ ++ekewyfF+ r +ky+++ r+nr+t sg+Wkatg Traes_4BL_F1BECD544.1 31 LPGYRFHPTDEELVTFYLRRKVAGKPLSI-EVIREMDIYKHDPWDLPkGSTVGGEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGI 117 69***************************.99***************445556899******************************** PP NAM 89 dkevlsk........kgelvglkktLvfykgrapkgektdWvmheyrl 128 d++++s+ +g l+glkk+Lv+y g+ k +ktdW+mhe+rl Traes_4BL_F1BECD544.1 118 DRPIYSAasggsgsgSGVLIGLKKSLVYYLGKFGKCTKTDWMMHEFRL 165 ******9888777666666***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-54 | 30 | 192 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.409 | 30 | 193 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-24 | 32 | 165 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MSAMEMEKLI SEEKVVLGGA GDEEEEDDVV LPGYRFHPTD EELVTFYLRR KVAGKPLSIE 60 VIREMDIYKH DPWDLPKGST VGGEKEWYFF CLRGRKYRNS IRPNRVTGSG FWKATGIDRP 120 IYSAASGGSG SGSGVLIGLK KSLVYYLGKF GKCTKTDWMM HEFRLLPSAP AATNASPSMQ 180 EAEVWTICRI FRRTITYRKQ QTWRTAPTPS AADQSSNTGS FESSEVGHEY MNYLQAPAPI 240 APCIPPQQHQ QYVSQMDAVN SNNFFYEDTM HNQQFQGQWN AAPAAPEPEE KPQNTPERFL 300 RGRGVFGGDR EDDGGHRYGR VLRLRKLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-48 | 32 | 199 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-48 | 32 | 199 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-48 | 32 | 199 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-48 | 32 | 199 | 19 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-48 | 32 | 199 | 19 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-48 | 32 | 199 | 19 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK360432 | 0.0 | AK360432.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1118B07. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164300.1 | 0.0 | transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9SK55 | 5e-81 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A3B6IY94 | 0.0 | A0A3B6IY94_WHEAT; Uncharacterized protein | ||||
STRING | Traes_4BL_F1BECD544.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1191 | 38 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 2e-72 | NAC domain containing protein 42 |