PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4BL_EDA8441F6.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GRAS

Protein Properties

Length: 122aa MW: 13563.5 Da PI: 5.8451

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4BL_EDA8441F6.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	100.8	2e-31	24	122	120	214
GRAS 120 sqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp....gEala 203 +qG+QWpaLlqaLa Rp+g+ps+R+Tgvg+p+++++++l+++g++La+fA +++v+f+++ l a +l+dle+ +L+ + E++ Traes_4BL_EDA8441F6.1 24 KQGMQWPALLQALALRPGGTPSFRLTGVGPPQPDETDALQQMGWKLAQFAYTIRVDFQYRGLGAATLADLEPFMLQPEDsneePEVIS 111 79***********************************************************************766666679 PP GRAS 204 Vnlvlqlhrll 214 Vn+v+++hrll Traes_4BL_EDA8441F6.1 112 VNSVFEMHRLL 122 ******986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	19.534	1	122	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.0E-29	24	122	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 122 aa Download sequence Send to blast
MRFSAAARSS LCFLATARRS TTFKQGMQWP ALLQALALRP GGTPSFRLTG VGPPQPDETD 60 ALQQMGWKLA QFAYTIRVDF QYRGLGAATL ADLEPFMLQP EDSNEEPEVI SVNSVFEMHR 120 LL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. In contrast, its overexpression prevents the GA signaling pathway and induces a dwarf phenotype. {ECO:0000269\|PubMed:10713441, ECO:0000269\|PubMed:11826299, ECO:0000269\|PubMed:20400938}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated following GA3 but not ABA application. {ECO:0000269\|PubMed:10713441}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ242531	1e-116	AJ242531.1 Triticum aestivum rht-D1a gene for gibberellin response modulator.
GenBank	FM878945	1e-116	FM878945.1 Triticum aestivum Rht-Ble gene for mutated DELLA protein.
GenBank	FN649763	1e-116	FN649763.1 Triticum aestivum rht1-B1b gene for DELLA protein RHT1, cultivar Xiaoyan54.
GenBank	FR668586	1e-116	FR668586.2 Triticum aestivum rht-B1 gene, allele a.
GenBank	FR668587	1e-116	FR668587.1 Triticum aestivum rht-B1 gene, allele h.
GenBank	FR668588	1e-116	FR668588.1 Triticum aestivum rht-B1 gene, allele i.
GenBank	FR668589	1e-116	FR668589.1 Triticum aestivum rht-B1 gene, allele j.
GenBank	FR668591	1e-116	FR668591.1 Triticum aestivum rht-D1 gene, allele f.
GenBank	FR668593	1e-116	FR668593.1 Triticum aestivum rht-D1 gene, allele i.
GenBank	FR719732	1e-116	FR719732.1 Triticum aestivum rht-B1a gene for DELLA protein.
GenBank	GQ451334	1e-116	GQ451334.1 Triticum aestivum cultivar Xiaoyan 54 DELLA protein RHT-D1 gene, complete cds.
GenBank	GQ451335	1e-116	GQ451335.2 Triticum aestivum cultivar Xiaoyan 54 truncated DELLA protein RHT-B1b gene, complete cds.
GenBank	HE585643	1e-116	HE585643.1 Triticum aestivum Rht-D1 gene for DELLA protein, allele Rht-D1a.
GenBank	HQ435325	1e-116	HQ435325.1 Triticum aestivum clone BAC 1J9 Tmemb_185A domain-containing protein (1J9.1), EamA domain-containing protein (1J9.2), and Rht-D1b (Rht-D1b) genes, complete cds, complete sequence.
GenBank	JF930278	1e-116	JF930278.1 Triticum aestivum DELLA protein (Rht-B1) gene, Rht-B1a allele, complete cds.
GenBank	JF930279	1e-116	JF930279.1 Triticum aestivum DELLA protein (Rht-B1) gene, Rht-B1c allele, complete cds.
GenBank	JF930280	1e-116	JF930280.1 Triticum aestivum DELLA protein (Rht-B1) gene, Rht-B1e allele, complete cds.
GenBank	JF930281	1e-116	JF930281.1 Triticum aestivum DELLA protein (Rht-D1) gene, Rht-D1b allele, complete cds.
GenBank	JN857970	1e-116	JN857970.1 Triticum aestivum mutant DELLA protein gene, complete cds.
GenBank	JN857971	1e-116	JN857971.1 Triticum aestivum mutant DELLA protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631543.1	2e-57	DELLA protein SLR1
Swissprot	Q7G7J6	2e-58	SLR1_ORYSJ; DELLA protein SLR1
TrEMBL	A1KZ98	1e-58	A1KZ98_9ORYZ; GAI (Fragment)
TrEMBL	A1KZ99	1e-58	A1KZ99_9ORYZ; GAI (Fragment)
TrEMBL	A1KZA0	1e-58	A1KZA0_ORYLO; GAI (Fragment)
TrEMBL	A1KZA1	9e-59	A1KZA1_9ORYZ; GAI (Fragment)
TrEMBL	A1KZA2	1e-58	A1KZA2_ORYNI; GAI (Fragment)
TrEMBL	A1KZA4	1e-58	A1KZA4_ORYSJ; GAI (Fragment)
TrEMBL	A1KZA5	1e-58	A1KZA5_ORYSJ; GAI (Fragment)
TrEMBL	A1KZA8	9e-59	A1KZA8_ORYSJ; GAI (Fragment)
TrEMBL	A1KZA9	9e-59	A1KZA9_ORYSJ; GAI (Fragment)
TrEMBL	A1KZB0	8e-59	A1KZB0_ORYSI; GAI (Fragment)
TrEMBL	A1KZB1	9e-59	A1KZB1_ORYSI; GAI (Fragment)
TrEMBL	A1KZB2	9e-59	A1KZB2_ORYSI; GAI (Fragment)
TrEMBL	A1KZB4	1e-58	A1KZB4_ORYSI; GAI (Fragment)
TrEMBL	A1KZB8	9e-59	A1KZB8_ORYSI; GAI (Fragment)
TrEMBL	A1KZB9	9e-59	A1KZB9_ORYRU; GAI (Fragment)
TrEMBL	A1KZC0	1e-58	A1KZC0_ORYRU; GAI (Fragment)
TrEMBL	A1KZC1	9e-59	A1KZC1_ORYRU; GAI (Fragment)
TrEMBL	A1KZC2	1e-58	A1KZC2_ORYRU; GAI (Fragment)
TrEMBL	A1KZC3	1e-58	A1KZC3_ORYRU; GAI (Fragment)
TrEMBL	A1KZC5	9e-59	A1KZC5_ORYRU; GAI (Fragment)
STRING	Traes_4BL_EDA8441F6.1	3e-85	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP998	38	138

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	4e-41	RGA-like 2

Publications ? help Back to Top
Ueguchi-Tanaka M, et al. Rice dwarf mutant d1, which is defective in the alpha subunit of the heterotrimeric G protein, affects gibberellin signal transduction. Proc. Natl. Acad. Sci. U.S.A., 2000. 97(21): p. 11638-43 [PMID:11027362] Ikeda A, et al. The slender rice mutant, with constitutively activated gibberellin signal transduction, has enhanced capacity for abscisic acid level. Plant Cell Physiol., 2002. 43(9): p. 974-9 [PMID:12354914] Itoh H,Matsuoka M,Steber CM A role for the ubiquitin-26S-proteasome pathway in gibberellin signaling. Trends Plant Sci., 2003. 8(10): p. 492-7 [PMID:14557046] Oguchi K,Tanaka N,Komatsu S,Akao S Methylmalonate-semialdehyde dehydrogenase is induced in auxin-stimulated and zinc-stimulated root formation in rice. Plant Cell Rep., 2004. 22(11): p. 848-58 [PMID:15045523] Day RB, et al. Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells. Plant Mol. Biol., 2004. 54(2): p. 261-72 [PMID:15159627] Oikawa T,Koshioka M,Kojima K,Yoshida H,Kawata M A role of OsGA20ox1 , encoding an isoform of gibberellin 20-oxidase, for regulation of plant stature in rice. Plant Mol. Biol., 2004. 55(5): p. 687-700 [PMID:15604710] Komorisono M, et al. Analysis of the rice mutant dwarf and gladius leaf 1. Aberrant katanin-mediated microtubule organization causes up-regulation of gibberellin biosynthetic genes independently of gibberellin signaling. Plant Physiol., 2005. 138(4): p. 1982-93 [PMID:16040652] Tanaka N, et al. Proteome approach to characterize the methylmalonate-semialdehyde dehydrogenase that is regulated by gibberellin. J. Proteome Res., 2005 Sep-Oct. 4(5): p. 1575-82 [PMID:16212409] Itoh H, et al. Overexpression of a GRAS protein lacking the DELLA domain confers altered gibberellin responses in rice. Plant J., 2005. 44(4): p. 669-79 [PMID:16262715] Luo A, et al. EUI1, encoding a putative cytochrome P450 monooxygenase, regulates internode elongation by modulating gibberellin responses in rice. Plant Cell Physiol., 2006. 47(2): p. 181-91 [PMID:16306061] Tsuji H, et al. GAMYB controls different sets of genes and is differentially regulated by microRNA in aleurone cells and anthers. Plant J., 2006. 47(3): p. 427-44 [PMID:16792694] Shimada A, et al. The rice SPINDLY gene functions as a negative regulator of gibberellin signaling by controlling the suppressive function of the DELLA protein, SLR1, and modulating brassinosteroid synthesis. Plant J., 2006. 48(3): p. 390-402 [PMID:17052323] Ueguchi-Tanaka M,Nakajima M,Motoyuki A,Matsuoka M Gibberellin receptor and its role in gibberellin signaling in plants. Annu Rev Plant Biol, 2007. 58: p. 183-98 [PMID:17472566] Liu T,Gu JY,Xu CJ,Gao Y,An CC Overproduction of OsSLRL2 alters the development of transgenic Arabidopsis plants. Biochem. Biophys. Res. Commun., 2007. 358(4): p. 983-9 [PMID:17521606] Ueguchi-Tanaka M, et al. Molecular interactions of a soluble gibberellin receptor, GID1, with a rice DELLA protein, SLR1, and gibberellin. Plant Cell, 2007. 19(7): p. 2140-55 [PMID:17644730] Eckardt NA GA perception and signal transduction: molecular interactions of the GA receptor GID1 with GA and the DELLA protein SLR1 in rice. Plant Cell, 2007. 19(7): p. 2095-7 [PMID:17918309] Zhang Y, et al. Gibberellin homeostasis and plant height control by EUI and a role for gibberellin in root gravity responses in rice. Cell Res., 2008. 18(3): p. 412-21 [PMID:18268540] Aleman L, et al. Functional analysis of cotton orthologs of GA signal transduction factors GID1 and SLR1. Plant Mol. Biol., 2008. 68(1-2): p. 1-16 [PMID:18506581] Ueguchi-Tanaka M,Hirano K,Hasegawa Y,Kitano H,Matsuoka M Release of the repressive activity of rice DELLA protein SLR1 by gibberellin does not require SLR1 degradation in the gid2 mutant. Plant Cell, 2008. 20(9): p. 2437-46 [PMID:18827181] Fukao T,Bailey-Serres J Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(43): p. 16814-9 [PMID:18936491] Asano K, et al. Isolation and characterization of dominant dwarf mutants, Slr1-d, in rice. Mol. Genet. Genomics, 2009. 281(2): p. 223-31 [PMID:19066966] Kojima M, et al. Highly sensitive and high-throughput analysis of plant hormones using MS-probe modification and liquid chromatography-tandem mass spectrometry: an application for hormone profiling in Oryza sativa. Plant Cell Physiol., 2009. 50(7): p. 1201-14 [PMID:19369275] Hirano K, et al. Characterization of the molecular mechanism underlying gibberellin perception complex formation in rice. Plant Cell, 2010. 22(8): p. 2680-96 [PMID:20716699] Hayashi-Tsugane M, et al. A rice mutant displaying a heterochronically elongated internode carries a 100 kb deletion. J Genet Genomics, 2011. 38(3): p. 123-8 [PMID:21477784] Fukumoto T, et al. Rare sugar D-allose suppresses gibberellin signaling through hexokinase-dependent pathway in Oryza sativa L. Planta, 2011. 234(6): p. 1083-95 [PMID:21717189] Bhattacharyya J, et al. Native polyubiquitin promoter of rice provides increased constitutive expression in stable transgenic rice plants. Plant Cell Rep., 2012. 31(2): p. 271-9 [PMID:21996937] Wu J, et al. Dominant and pleiotropic effects of a GAI gene in wheat results from a lack of interaction between DELLA and GID1. Plant Physiol., 2011. 157(4): p. 2120-30 [PMID:22010107] De Vleesschauwer D, et al. Brassinosteroids antagonize gibberellin- and salicylate-mediated root immunity in rice. Plant Physiol., 2012. 158(4): p. 1833-46 [PMID:22353574] Phanchaisri B,Samsang N,Yu L,Singkarat S,Anuntalabhochai S Expression of OsSPY and 14-3-3 genes involved in plant height variations of ion-beam-induced KDML 105 rice mutants. Mutat. Res., 2012. 734(1-2): p. 56-61 [PMID:22445891] Mimura M,Nagato Y,Itoh J Rice PLASTOCHRON genes regulate leaf maturation downstream of the gibberellin signal transduction pathway. Planta, 2012. 235(5): p. 1081-9 [PMID:22476293] Jiang X, et al. Gibberellin indirectly promotes chloroplast biogenesis as a means to maintain the chloroplast population of expanded cells. Plant J., 2012. 72(5): p. 768-80 [PMID:23020316] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Schmitz AJ,Folsom JJ,Jikamaru Y,Ronald P,Walia H SUB1A-mediated submergence tolerance response in rice involves differential regulation of the brassinosteroid pathway. New Phytol., 2013. 198(4): p. 1060-70 [PMID:23496140] Hori K, et al. Hd16, a gene for casein kinase I, is involved in the control of rice flowering time by modulating the day-length response. Plant J., 2013. 76(1): p. 36-46 [PMID:23789941] Sato T, et al. Expression and purification of a GRAS domain of SLR1, the rice DELLA protein. Protein Expr. Purif., 2014. 95: p. 248-58 [PMID:24463428] Sakata T, et al. Reduction of gibberellin by low temperature disrupts pollen development in rice. Plant Physiol., 2014. 164(4): p. 2011-9 [PMID:24569847] Wang W, et al. Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice. PLoS Genet., 2014. 10(3): p. e1004154 [PMID:24625559] Mimura M,Itoh J Genetic interaction between rice PLASTOCHRON genes and the gibberellin pathway in leaf development. Rice (N Y), 2014. 7(1): p. 25 [PMID:25243048] Yano K, et al. Comprehensive gene expression analysis of rice aleurone cells: probing the existence of an alternative gibberellin receptor. Plant Physiol., 2015. 167(2): p. 531-44 [PMID:25511432] Fan T, et al. Rice osa-miR171c Mediates Phase Change from Vegetative to Reproductive Development and Shoot Apical Meristem Maintenance by Repressing Four OsHAM Transcription Factors. PLoS ONE, 2015. 10(5): p. e0125833 [PMID:26023934] Zhu N, et al. The R2R3-type MYB gene OsMYB91 has a function in coordinating plant growth and salt stress tolerance in rice. Plant Sci., 2015. 236: p. 146-56 [PMID:26025528] Ye Y, et al. CEF1/OsMYB103L is involved in GA-mediated regulation of secondary wall biosynthesis in rice. Plant Mol. Biol., 2015. 89(4-5): p. 385-401 [PMID:26350403] Zhao QC, et al. Generation of insect-resistant and glyphosate-tolerant rice by introduction of a T-DNA containing two Bt insecticidal genes and an EPSPS gene. J Zhejiang Univ Sci B, 2015. 16(10): p. 824-31 [PMID:26465130] De Vleesschauwer D, et al. The DELLA Protein SLR1 Integrates and Amplifies Salicylic Acid- and Jasmonic Acid-Dependent Innate Immunity in Rice. Plant Physiol., 2016. 170(3): p. 1831-47 [PMID:26829979] Yang C,Ma Y,Li J The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway. J. Exp. Bot., 2016. 67(18): p. 5545-5556 [PMID:27578842]