PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4BL_ECD20BE67.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 316aa MW: 35099.8 Da PI: 4.7143 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.2 | 1.6e-19 | 64 | 115 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ eq+++Le+ Fe +++++ e+++++A+ lgL rqV vWFqNrRa++k Traes_4BL_ECD20BE67.1 64 RRLALEQVRALERSFETDNKLDPERKARIARDLGLHPRQVAVWFQNRRARWK 115 467789*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 128.9 | 2.1e-41 | 62 | 153 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 kkrrl+ eqv++LE+sFe+++kL+perK+++ar+Lgl+prqvavWFqnrRAR+ktkqlE+d++aL++++dal+++ ++L++++++L++ Traes_4BL_ECD20BE67.1 62 KKRRLALEQVRALERSFETDNKLDPERKARIARDLGLHPRQVAVWFQNRRARWKTKQLERDFNALRARHDALRADCDALRRDKDALAA 149 9**************************************************************************************9 PP HD-ZIP_I/II 90 elke 93 e++e Traes_4BL_ECD20BE67.1 150 EIHE 153 9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.72E-18 | 60 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.9E-19 | 60 | 121 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 16.552 | 62 | 117 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.84E-17 | 62 | 118 | No hit | No description |
Pfam | PF00046 | 8.9E-17 | 64 | 115 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-19 | 69 | 116 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 4.4E-5 | 88 | 97 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 92 | 115 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 4.4E-5 | 97 | 113 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.8E-16 | 117 | 158 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MKRQIKRPTR SQESPEPGEK LAFAEKEHLL AAYMEHDEPE LEEADEEEEE EERAMSCGLG 60 GKKRRLALEQ VRALERSFET DNKLDPERKA RIARDLGLHP RQVAVWFQNR RARWKTKQLE 120 RDFNALRARH DALRADCDAL RRDKDALAAE IHELREKLSI KPETAVKAEA TGNVDAAEER 180 LQQATMVGAT VCKDGSSDSD SSAVFNDEAS PYSSAVFEQQ GFMGFGASFL DSASAAAATT 240 GCSSLPMLEP KWPGAYPYDA NRSGGYGFTE EWLAGSDAIV NDGSSAFFSE EHVSNLNFGW 300 CSSGAEGFDL QSYCKK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 109 | 117 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353965 | 0.0 | AK353965.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1004B20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020190062.1 | 0.0 | homeobox-leucine zipper protein HOX13-like | ||||
Swissprot | Q10QP3 | 1e-109 | HOX13_ORYSJ; Homeobox-leucine zipper protein HOX13 | ||||
TrEMBL | A0A3B6IVL4 | 0.0 | A0A3B6IVL4_WHEAT; Uncharacterized protein | ||||
STRING | Traes_4BL_ECD20BE67.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4283 | 31 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 3e-31 | homeobox 1 |
Publications ? help Back to Top | |||
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