PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BL_CDCFB216C.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 139aa    MW: 14359.2 Da    PI: 7.5188
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BL_CDCFB216C.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS71.61.5e-221124129250
                   GRAS 129 lqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll 214
                            +qa++sRp   +pp+lRiT++ ++  g +++++e g+rLa fA ++g pf+f     ++ e +++ + r+ +gE+l+ n++l+     
  Traes_4BL_CDCFB216C.1   1 MQAMTSRPdgVSPPHLRITAITRSGGGGARAVQEAGRRLAAFAGSIGQPFSFGHCRLDSDERFRPATVRMVKGETLVANCILHQAAAT 88 
                            9*******6666***********7777**************************99999**********************99665554 PP

                   GRAS 215 desvsles.erdevLklvkslsPkvvvvveqeadhns 250
                              +v  +     ++L  + sl +kvv+vve+e + ++
  Traes_4BL_CDCFB216C.1  89 -TTVRRPTgSVASFLTGMASLGAKVVTVVEEEGEAEK 124
                            .333333347899*******************98754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035145.1E-201124IPR005202Transcription factor GRAS
PROSITE profilePS5098517.1651139IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MQAMTSRPDG VSPPHLRITA ITRSGGGGAR AVQEAGRRLA AFAGSIGQPF SFGHCRLDSD  60
ERFRPATVRM VKGETLVANC ILHQAAATTT VRRPTGSVAS FLTGMASLGA KVVTVVEEEG  120
EAEKSEEEAS DAAAGGFVG
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151677.12e-89nodulation-signaling pathway 2 protein-like
RefseqXP_020163850.12e-90nodulation-signaling pathway 2 protein-like
SwissprotQ5NE242e-33NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A3B6ISN64e-89A0A3B6ISN6_WHEAT; Uncharacterized protein
TrEMBLA0A446S8M74e-89A0A446S8M7_TRITD; Uncharacterized protein
STRINGTraes_4AS_19FA06316.11e-89(Triticum aestivum)
STRINGTraes_4BL_CDCFB216C.19e-95(Triticum aestivum)
STRINGTRIUR3_13261-P11e-89(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75803148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.13e-25GRAS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]