PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4BL_C7F1E5ECA.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C2H2 | ||||||||
Protein Properties | Length: 62aa MW: 6859.85 Da PI: 7.9519 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.4 | 2.9e-06 | 41 | 61 | 1 | 21 |
EEETTTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21 ++C++C+k F r nL+ H r Traes_4BL_C7F1E5ECA.1 41 FVCEICNKGFQRDQNLQLHRR 61 89*****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 2.8E-6 | 40 | 61 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.79E-5 | 41 | 61 | No hit | No description |
PROSITE profile | PS50157 | 9.972 | 41 | 62 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 1.5E-5 | 41 | 62 | IPR022755 | Zinc finger, double-stranded RNA binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 62 aa Download sequence Send to blast |
FTERARLLLA CGGDLGSCTH ADPDAEVIAL SPKTLMATNR FVCEICNKGF QRDQNLQLHR 60 RG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375990 | 1e-60 | AK375990.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3111P12. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017237443.1 | 1e-22 | PREDICTED: protein indeterminate-domain 9 | ||||
Swissprot | Q9LVQ7 | 8e-23 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
TrEMBL | A0A438GP47 | 2e-22 | A0A438GP47_VITVI; Protein indeterminate-domain 1 | ||||
TrEMBL | A0A453P946 | 6e-22 | A0A453P946_AEGTS; Uncharacterized protein | ||||
STRING | Traes_4BL_C7F1E5ECA.1 | 3e-39 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP24616 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66730.1 | 3e-25 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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