PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4BL_83F647CBE.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bHLH

Protein Properties

Length: 324aa MW: 35749 Da PI: 6.3203

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4BL_83F647CBE.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.4	4.6e-12	148	196	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L++l+P + +k Ka++L + ++Y++sLq Traes_4BL_83F647CBE.2 148 NNHSLAERFRREKINERMKHLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 196 58************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.21E-12	143	200	No hit	No description
SuperFamily	SSF47459	5.89E-18	143	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-18	145	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.847	145	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.4E-9	148	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-10	151	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MQHHTEIRYE AQLHKMYSPP CSAAGSNGER SFTAGANPLA LLDHAMDFDE HVLFPMHNAG 60 MQDGVQFYNP TAGGTELSRN MSMEKGLKGG KRKGSGEGSS MMHSQQEETG AMSQREVSME 120 RAGEKEGDGA SNREDYVHIR AKRGQATNNH SLAERFRREK INERMKHLQD LVPGCNKITG 180 KAMMLDEIIN YVQSLQRQVE FLSMKLSAVS PELSCDLDLQ DILCPQDAHS TFPGYGQRLG 240 NVHPNNNMYR ASQPGLSRPE LYGNGIIIPN PASVHMARTA QQLSAFPQRS ILWDEELGNV 300 GPAAFPSDVV GTSSLENSDS MKVE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020159228.1	0.0	transcription factor bHLH137-like isoform X1
TrEMBL	A0A3B6IV29	0.0	A0A3B6IV29_WHEAT; Uncharacterized protein
TrEMBL	A0A446SAB0	0.0	A0A446SAB0_TRITD; Uncharacterized protein
STRING	Traes_4BL_83F647CBE.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4536	29	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	2e-43	bHLH family protein

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]