PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4BL_78DD63002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 205aa MW: 22631.6 Da PI: 8.8556 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.4 | 2.5e-18 | 37 | 91 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Le+ F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k Traes_4BL_78DD63002.1 37 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTK 91 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 127.1 | 7.8e-41 | 37 | 125 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rl+keq++lLE+ F+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL++e +eLr Traes_4BL_78DD63002.1 37 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQRELQELR 124 69*************************************************************************************9 PP HD-ZIP_I/II 89 ee 90 + Traes_4BL_78DD63002.1 125 -A 125 .4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.3E-18 | 23 | 92 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.68E-19 | 28 | 94 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.232 | 33 | 93 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.8E-16 | 35 | 97 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.1E-15 | 37 | 91 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.10E-15 | 37 | 94 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 68 | 91 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 2.8E-11 | 93 | 126 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 7.1E-23 | 93 | 136 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MSVGGAVKRE RAEEADLGEM VSSTAAGAEE DDDGSTRKKL RLTKEQSALL EDRFKEHSTL 60 NPKQKVALAK QLNLRPRQVE VWFQNRRART KLKQTEVDCE FLKRCCETLT EENRRLQREL 120 QELRAIKFAP PPPPNNASQH PGTPSSAAAP PAPFYMQLPA ATLTICPSCE RLGGTAATAA 180 GKVDPDRPKA ATHHFFNPFT HSAAC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 35 | 41 | TRKKLRL |
2 | 85 | 93 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00477 | DAP | Transfer from AT4G37790 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. | |||||
UniProt | INDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP097788 | 1e-145 | FP097788.1 Phyllostachys edulis cDNA clone: bphylf059k15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020173855.1 | 1e-149 | homeobox-leucine zipper protein HOX19-like | ||||
Swissprot | A2XE76 | 1e-106 | HOX19_ORYSI; Homeobox-leucine zipper protein HOX19 | ||||
Swissprot | Q8GRL4 | 1e-106 | HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19 | ||||
TrEMBL | A0A3B6IRQ4 | 1e-149 | A0A3B6IRQ4_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446SAE8 | 1e-149 | A0A446SAE8_TRITD; Uncharacterized protein | ||||
STRING | Traes_4BL_78DD63002.1 | 1e-149 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2055 | 36 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 1e-55 | homeobox from Arabidopsis thaliana |
Publications ? help Back to Top | |||
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