PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BL_1BE7F5B91.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 272aa    MW: 30651.3 Da    PI: 10.1262
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BL_1BE7F5B91.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.97.7e-1320901081
                           HHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                     B3 10 vlksgrlvlpkkfaeeh..ggkkeesktltled.esg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81
                           + +s+rl+lp kf+     g    ++++++l+   +g r W+vk+  +   g+++l++GW++F++a++L+ gDf v
  Traes_4BL_1BE7F5B91.2 20 N-SSSRLRLPDKFTMVLldG-G--KPQEVKLREaGHGrRFWDVKVVLDAD-GHMYLERGWEQFARAHDLRLGDFXV 90
                           4.4567*******9444843.4..3446777774555699*****65555.56789*****************987 PP
2B340.55e-131722461286
                            HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                     B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                            +++ l +p +f  +hg+ ++++++l++   +g+sW v l++   +++++r  ++ GW +F+ +n L egD++ F+  +
  Traes_4BL_1BE7F5B91.2 172 QEQYLNVPVDFQLAHGYAERSKVELRM---RGKSWLVHLKHnpkTGGRSRASFRYGWHQFCVDNALGEGDTCFFRALR 246
                            5677899****99**999888766664...67*******997666666669***********************9544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.22310110IPR003340B3 DNA binding domain
CDDcd100171.57E-151388No hitNo description
Gene3DG3DSA:2.40.330.104.1E-121389IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.67E-121388IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.7E-913110IPR003340B3 DNA binding domain
PfamPF023625.4E-102090IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-21157267IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.003159267IPR003340B3 DNA binding domain
CDDcd100171.51E-9159265No hitNo description
PROSITE profilePS5086311.209161267IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-13161247IPR015300DNA-binding pseudobarrel domain
PfamPF023622.4E-10171247IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MHAETGEMEG FEFFQIVLDN SSSRLRLPDK FTMVLLDGGK PQEVKLREAG HGRRFWDVKV  60
VLDADGHMYL ERGWEQFARA HDLRLGDFXV RPCARPAARV LPRVQLRRRR RAHRQGVRRG  120
SESSSDGDSG SSNTSDGGSG GNNRSLVEMD VEDGPTGQFS AMLRKCNLGM KQEQYLNVPV  180
DFQLAHGYAE RSKVELRMRG KSWLVHLKHN PKTGGRSRAS FRYGWHQFCV DNALGEGDTC  240
FFRALRQGSA GGGGEDHLLK VEVRRRDGSF LV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3749481e-137AK374948.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3081B06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168607.11e-149B3 domain-containing protein Os03g0212300-like
SwissprotQ10Q265e-62Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBLA0A3B6ITW41e-163A0A3B6ITW4_WHEAT; Uncharacterized protein
STRINGTraes_4BL_1BE7F5B91.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.11e-08B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]