PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AS_DBDA5E9C6.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 354aa    MW: 38389.5 Da    PI: 9.4995
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AS_DBDA5E9C6.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.74.7e-5391361128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            lppGfrFhPtdeel+ +yL+++++++++++ ++i++vdiyk++Pw Lp+k++ +++ewyfF++rd+ky++g r+nra+ sgyWkatg+
  Traes_4AS_DBDA5E9C6.1   9 LPPGFRFHPTDEELILHYLRNRAAESPCPV-SIIADVDIYKFDPWALPSKASYGDREWYFFTPRDRKYPNGVRPNRAAGSGYWKATGT 95 
                            79****************************.89***************988899********************************** PP

                    NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            dk++ ++ +ge vg+kk Lvfykgr pkg kt+W+mheyrl
  Traes_4AS_DBDA5E9C6.1  96 DKPIRCSaTGESVGVKKALVFYKGRPPKGIKTNWIMHEYRL 136
                            ****99878999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-635170IPR003441NAC domain
PROSITE profilePS5100561.4939170IPR003441NAC domain
PfamPF023652.6E-2710136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MIMSDPAMLP PGFRFHPTDE ELILHYLRNR AAESPCPVSI IADVDIYKFD PWALPSKASY  60
GDREWYFFTP RDRKYPNGVR PNRAAGSGYW KATGTDKPIR CSATGESVGV KKALVFYKGR  120
PPKGIKTNWI MHEYRLAAAD AHAANTYRPM KFRNASMRLD DWVLCRIYKK TSQASPMAVP  180
PLSDHELDEP SGAAGYPMSS AGMIMQGGAG GYPLQAAAGG TQRMPKIPSI SELLNEYSLA  240
QLFEDSGHAL MARHDQHAAL LGHPIMSQFH VNGMPQLGQM DSSASTSVGG EGAAGKRKRP  300
SEDGDRNGST SQPAAAVTGK KPNTSCLGAT TFQTGNNTLQ GSSLGQGHQT LLRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-72917417169NO APICAL MERISTEM PROTEIN
1ut4_B2e-72917417169NO APICAL MERISTEM PROTEIN
1ut7_A2e-72917417169NO APICAL MERISTEM PROTEIN
1ut7_B2e-72917417169NO APICAL MERISTEM PROTEIN
3swm_A2e-72917420172NAC domain-containing protein 19
3swm_B2e-72917420172NAC domain-containing protein 19
3swm_C2e-72917420172NAC domain-containing protein 19
3swm_D2e-72917420172NAC domain-containing protein 19
3swp_A2e-72917420172NAC domain-containing protein 19
3swp_B2e-72917420172NAC domain-containing protein 19
3swp_C2e-72917420172NAC domain-containing protein 19
3swp_D2e-72917420172NAC domain-containing protein 19
4dul_A2e-72917417169NAC domain-containing protein 19
4dul_B2e-72917417169NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2510580.0AK251058.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf97a05, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162550.10.0NAC transcription factor NAM-B1-like
TrEMBLA0A3B6HTB20.0A0A3B6HTB2_WHEAT; Uncharacterized protein
TrEMBLA0A446QVC00.0A0A446QVC0_TRITD; Uncharacterized protein
STRINGTraes_4AS_DBDA5E9C6.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.14e-85NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]