PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AS_B95A1C3A1.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 342aa    MW: 37645.3 Da    PI: 5.9665
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AS_B95A1C3A1.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.24.4e-55231501129
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            lppGfrFhPtdee++++yL++k+ ++++    vi evd++k+ePw+Lp k+k +ekewyfF+++d+ky+tg+r+nrat+sgyWkatgk
  Traes_4AS_B95A1C3A1.1  23 LPPGFRFHPTDEEIISHYLTPKALDHRFCS-GVIGEVDLNKCEPWHLPGKAKMGEKEWYFFCHKDRKYPTGTRTNRATESGYWKATGK 109
                            79*************************888.89***************99999*********************************** PP

                    NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                            dke+++ +g lvg+kktLvfy grap+gekt Wvmhe+rle
  Traes_4AS_B95A1C3A1.1 110 DKEIFRGRGLLVGMKKTLVFYLGRAPRGEKTGWVMHEFRLE 150
                            ******9*******************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-6316173IPR003441NAC domain
PROSITE profilePS5100557.11823173IPR003441NAC domain
PfamPF023651.0E-2824149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:1900057Biological Processpositive regulation of leaf senescence
GO:1903648Biological Processpositive regulation of chlorophyll catabolic process
GO:0005634Cellular Componentnucleus
GO:0000975Molecular Functionregulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MSEASVINQA EVEDAAAAAG LDLPPGFRFH PTDEEIISHY LTPKALDHRF CSGVIGEVDL  60
NKCEPWHLPG KAKMGEKEWY FFCHKDRKYP TGTRTNRATE SGYWKATGKD KEIFRGRGLL  120
VGMKKTLVFY LGRAPRGEKT GWVMHEFRLE GKLPHPLPRS AKDEWAVSKV FNKELTATNG  180
AMAAADAGIE RVSSFGFITD FLDSGELPPL MDPPLGGDVD QVTDFKSTSA YATGAHSGHQ  240
VKMEQHMPQQ PPHMMYSSPY FSLPAANSGD MSPAIRRYCK AEQVSGQTSA LSPSRETGLS  300
TDPNAAGCAE ISSAATPSSQ NQEFLDEFDE YPALNLADIW KY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-52121776169NO APICAL MERISTEM PROTEIN
1ut4_B3e-52121776169NO APICAL MERISTEM PROTEIN
1ut7_A3e-52121776169NO APICAL MERISTEM PROTEIN
1ut7_B3e-52121776169NO APICAL MERISTEM PROTEIN
3swm_A2e-52121779172NAC domain-containing protein 19
3swm_B2e-52121779172NAC domain-containing protein 19
3swm_C2e-52121779172NAC domain-containing protein 19
3swm_D2e-52121779172NAC domain-containing protein 19
3swp_A2e-52121779172NAC domain-containing protein 19
3swp_B2e-52121779172NAC domain-containing protein 19
3swp_C2e-52121779172NAC domain-containing protein 19
3swp_D2e-52121779172NAC domain-containing protein 19
4dul_A3e-52121776169NAC domain-containing protein 19
4dul_B3e-52121776169NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00332DAPTransfer from AT3G04060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3762970.0AK376297.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3120C21.
GenBankFR8197630.0FR819763.1 Hordeum vulgare subsp. vulgare mRNA for NAC transcription factor (NAC013 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162549.10.0NAC domain-containing protein 92-like
TrEMBLA0A3B6HRS80.0A0A3B6HRS8_WHEAT; Uncharacterized protein
TrEMBLA0A446QV880.0A0A446QV88_TRITD; Uncharacterized protein
STRINGTraes_4AS_B95A1C3A1.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP186238104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04060.16e-81NAC domain containing protein 46
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]