PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AS_8A64DBE8E.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 296aa    MW: 31792 Da    PI: 4.2089
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AS_8A64DBE8E.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.2e-1776125255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            +y+GVr+++ +g+W+AeIrdp+    +  r++lg+f +ae Aa a++ a++ ++g
  Traes_4AS_8A64DBE8E.1  76 KYRGVRRRP-WGKWAAEIRDPV----KgVRVWLGTFPSAEAAAHAYDDAARGFRG 125
                            8********.**********75....44**********************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.93E-2075135No hitNo description
SuperFamilySSF541714.9E-2276134IPR016177DNA-binding domain
SMARTSM003802.8E-3676139IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-3176135IPR001471AP2/ERF domain
PfamPF008475.1E-1176123IPR001471AP2/ERF domain
PROSITE profilePS5103224.72476133IPR001471AP2/ERF domain
PRINTSPR003673.6E-107788IPR001471AP2/ERF domain
PRINTSPR003673.6E-1099115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MCGGAILAEL MPSAPPRSVT AVHLLPKRQR VDDFEVAFKR FDEDPEEEEE VRQCAGFEFG  60
ARGQPAARRG GGRPAKYRGV RRRPWGKWAA EIRDPVKGVR VWLGTFPSAE AAAHAYDDAA  120
RGFRGANARL NFPSSSTSAP KCRVAEKPTP FVVIDLDDDE EGDAGAADAG GISSESSGAL  180
PDFSWQGMSA SDEVTAQSVH AEVESGQSVV DLGSAKKRPR IEADEVLPAA SDDSANQLLD  240
PFMFDDELGF LDSSSYEWLD GLFGADAEKI DGSQLGLWSF GDDDCLAEDS ACVQVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1971134973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7813530.0AY781353.1 Triticum aestivum ethylene-responsive element binding protein 2 (EREB2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797880.12e-67ethylene-responsive transcription factor ERF073-like
TrEMBLA0A3B6HQ560.0A0A3B6HQ56_WHEAT; Uncharacterized protein
TrEMBLA0A446QJH40.0A0A446QJH4_TRITD; Uncharacterized protein
STRINGTraes_4AS_8A64DBE8E.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43712654
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.11e-21ERF family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]