PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4AS_636DF8B4C.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 692aa MW: 76630.1 Da PI: 6.827

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4AS_636DF8B4C.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.3	4.6e-27	49	139	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fY+ YA+++GF++r+s+ ++s+++++i++r+ vCskeg++e+++ + ++++++r+ tr+gCka++++kk + gkw+vtk+++ H Traes_4AS_636DF8B4C.2 49 DFYSLYARHAGFRIRISRYTRSRHDNSIISRRIVCSKEGFHETRNCEglhPDQKQQERTGTRVGCKAMIMIKKIDPGKWVVTKFVKTH 136 6*****************************************9999999999****************************** PP FAR1 86 nHe 88 nH Traes_4AS_636DF8B4C.2 137 NHG 139 6 PP
2	FAR1	89.4	5.1e-28	187	279	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 fY +YA+ GF+ r+s+ +s+r+++i++r+ vCskeg+re + kk + k++r+r+ tr+gCka+++vkk+++gkw+v+k+e+eH Traes_4AS_636DF8B4C.2 187 FYINYARLNGFRARISRYCRSRRDNSIISRQIVCSKEGFREVRAKKeitdEGKTKRPRMITRVGCKAMIVVKKMNSGKWMVSKFEKEH 274 9***************************************99999998899999**************************** PP FAR1 86 nHela 90 nH+l Traes_4AS_636DF8B4C.2 275 NHSLL 279 996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.3E-24	49	139	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	5.1E-26	187	279	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50103	9.178	440	468	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 692 aa Download sequence Send to blast
MEGLPRAFTV MEISSHEPSE AEILIGHEDD TELTPCEGMQ FESEDAARDF YSLYARHAGF 60 RIRISRYTRS RHDNSIISRR IVCSKEGFHE TRNCEGLHPD QKQQERTGTR VGCKAMIMIK 120 KIDPGKWVVT KFVKTHNHGS VPPRKLDIRS AHQDLNPVEK PHSTEEDSVE EPAEGMEFDS 180 EEAAKLFYIN YARLNGFRAR ISRYCRSRRD NSIISRQIVC SKEGFREVRA KKEITDEGKT 240 KRPRMITRVG CKAMIVVKKM NSGKWMVSKF EKEHNHSLLS SKQAPSTSNI TSGENAEFAA 300 KSSDPDEVKV EEYSAGIQCN STDSLTVLYN QLCQEAIKFA KEGSVTEEIY HVAMSALKEA 360 AEKVAQVKSC HPIMPHRGVS GSESKHKVVQ MKTMSASQCS DVAKQKTTPS QLTVFQESVS 420 KLMFIPTNLL TDSGLANSDS NHPSLCAFTS SGRQCGHGSE CSYLHAENRK EDCPEKYQNS 480 TSSRATQGNH STYHGHSEET TVAIPAIPLT LHMPLPRNSP GASADGQYKL LAAPIEAVPI 540 SYRPAEPIRQ PKRSFCNLGP LPGVMSELTR QEKGPHPLVH ATALACGARV VPVEEAASLI 600 KAIESKIRSG GAKIARLPSS RLTRLVPEAI SMSSSSEDGE ENDHSEPPAV NVEGYCHDDQ 660 ISEEMKLQGE ASELETDFEN CSGHENHDTA DC

Sequence ? help Back to Top

Protein Sequence Length: 692 aa Download sequence Send to blast

MEGLPRAFTV MEISSHEPSE AEILIGHEDD TELTPCEGMQ FESEDAARDF YSLYARHAGF  60
RIRISRYTRS RHDNSIISRR IVCSKEGFHE TRNCEGLHPD QKQQERTGTR VGCKAMIMIK  120
KIDPGKWVVT KFVKTHNHGS VPPRKLDIRS AHQDLNPVEK PHSTEEDSVE EPAEGMEFDS  180
EEAAKLFYIN YARLNGFRAR ISRYCRSRRD NSIISRQIVC SKEGFREVRA KKEITDEGKT  240
KRPRMITRVG CKAMIVVKKM NSGKWMVSKF EKEHNHSLLS SKQAPSTSNI TSGENAEFAA  300
KSSDPDEVKV EEYSAGIQCN STDSLTVLYN QLCQEAIKFA KEGSVTEEIY HVAMSALKEA  360
AEKVAQVKSC HPIMPHRGVS GSESKHKVVQ MKTMSASQCS DVAKQKTTPS QLTVFQESVS  420
KLMFIPTNLL TDSGLANSDS NHPSLCAFTS SGRQCGHGSE CSYLHAENRK EDCPEKYQNS  480
TSSRATQGNH STYHGHSEET TVAIPAIPLT LHMPLPRNSP GASADGQYKL LAAPIEAVPI  540
SYRPAEPIRQ PKRSFCNLGP LPGVMSELTR QEKGPHPLVH ATALACGARV VPVEEAASLI  600
KAIESKIRSG GAKIARLPSS RLTRLVPEAI SMSSSSEDGE ENDHSEPPAV NVEGYCHDDQ  660
ISEEMKLQGE ASELETDFEN CSGHENHDTA DC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020176088.1	0.0	uncharacterized protein LOC109761678
TrEMBL	A0A446QQM9	0.0	A0A446QQM9_TRITD; Uncharacterized protein
STRING	Traes_4AS_636DF8B4C.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9031	33	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	3e-36	FAR1-related sequence 7

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]