PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AS_501676A91.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 492aa    MW: 52084.9 Da    PI: 8.6774
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AS_501676A91.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-052244123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C++C+k F r  nL+ H r H
  Traes_4AS_501676A91.1 22 FVCEICNKGFQRDQNLQLHRRGH 44
                           89*******************88 PP
2zf-C2H213.50.0002298120123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            +kC +C+k +  +s+ k H +t+
  Traes_4AS_501676A91.1  98 WKCDKCSKKYAVQSDWKAHAKTC 120
                            58******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-52144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.19E-72144No hitNo description
PROSITE profilePS5015710.9492244IPR007087Zinc finger, C2H2
SMARTSM003550.0172244IPR015880Zinc finger, C2H2-like
PfamPF121717.8E-52244IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002802444IPR007087Zinc finger, C2H2
SMARTSM003552306393IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.7E-486119IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.19E-793118No hitNo description
SMARTSM0035515098118IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MPDPDAEVIA LSPKTLMATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL RQRSGKEVRK  60
RVYVCPEPSC VHHDASRALG DLTGIKKHFC RKHGEKKWKC DKCSKKYAVQ SDWKAHAKTC  120
GSREYRCDCG TLFSRRDSFI THRAFCDALA EESAKARAPP AEDGSSGAAA PPALPPPPAA  180
PVPLQQLPPA PAPQQHEEPG NDGQQREIGA AAPEPVVQYT PPAPLMPSPP SVNGANVSAS  240
TSSVAATSQS LLGSMFAPSS VAQAPQYPER ALAAKPPSLC LATDAASAQF SAPAADRQQQ  300
QLPPPSPSPS AHMSATALLQ KAAQMGATSS SSSFLRGLGL DISSSSPAST SSGQHHHHHH  360
HHHHQEAMQM QFPEGSLQQW PPRLEPEPAP MMSAGLGLGL PYDSTGGPMG LPELMMGQSS  420
LFSAKPATLD FLGLGMSPTG ATTSRGLPVF MQPMGGAVGM ARSGTGPPDT FGAGRGAQGK  480
PWERNPSSSP IL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-3694155364Zinc finger protein JACKDAW
5b3h_F7e-3694155364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3759900.0AK375990.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3111P12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152675.10.0protein indeterminate-domain 2-like
SwissprotQ9LVQ71e-131IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A3B6HPZ90.0A0A3B6HPZ9_WHEAT; Uncharacterized protein
STRINGTraes_4AS_501676A91.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.19e-97C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  3. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]