PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AS_3698CBB71.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 386aa    MW: 43134.6 Da    PI: 8.4903
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AS_3698CBB71.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.66.9e-161342201099
                            HHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                     B3  10 vlksgrlvlpkkfaeeh..ggkkeesktltled.esg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                            + +s+rl+lp kf++    g  k  +++++l+   +g r W+vk+  +   g+++l++GW++F++a++L+ g f+vF++dg  ++ l+
  Traes_4AS_3698CBB71.1 134 N-SSSRLRLPDKFTRVLldG-GK--PQEVKLQEaGHGrRFWDVKVVLDAD-GHMYLGRGWEQFARAHDLRLGYFLVFSFDG--DAVLT 214
                            4.5567********777844.43..446887774555699*****65555.5778***********************887..55569 PP

                            EEEE-S CS
                     B3  94 vkvfrk 99 
                            vkvf+ 
  Traes_4AS_3698CBB71.1 215 VKVFDV 220
                            999985 PP
2B338.42.2e-122863601286
                            HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                     B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldg 86 
                            +++ l +p +f  +hg+ ++++++l++   +g+sW v l+++ k g+     ++ GW +F+ +n L egD++ F+  +
  Traes_4AS_3698CBB71.1 286 QEQYLNVPVDFQLAHGYAERSKVELRM---RGKSWLVHLKHNPKTGGrprASFRYGWHQFCVDNALGEGDTCFFRALR 360
                            56678999***99**999888766664...67*******995555555679***********************9544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.662124221IPR003340B3 DNA binding domain
CDDcd100172.84E-20125219No hitNo description
SMARTSM010195.3E-17127221IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-18127223IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-17127223IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-13134220IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.4E-21271381IPR015300DNA-binding pseudobarrel domain
CDDcd100172.03E-9273379No hitNo description
SMARTSM010190.0028273381IPR003340B3 DNA binding domain
PROSITE profilePS5086310.955275381IPR003340B3 DNA binding domain
SuperFamilySSF1019361.04E-12275361IPR015300DNA-binding pseudobarrel domain
PfamPF023627.6E-10286361IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MCEPIAVRPF LTSPFLGGGV KKSIPEEESR EARRCIYHRC TFERRGRGRR RKEEEEGFAT  60
WHGIHGIVGS FFFLFLPLPL ALPSSQAPVS PPSQPAAAER GPGDRHRRLL SATPLRPETG  120
EMEGFEFFQI ILDNSSSRLR LPDKFTRVLL DGGKPQEVKL QEAGHGRRFW DVKVVLDADG  180
HMYLGRGWEQ FARAHDLRLG YFLVFSFDGD AVLTVKVFDV SMCRRHYQHD GDTSSGSSSD  240
GDSGSSNASD GGSGGNNWSL AEMDVEDGPT GQFSAMLRKC NLGMKQEQYL NVPVDFQLAH  300
GYAERSKVEL RMRGKSWLVH LKHNPKTGGR PRASFRYGWH QFCVDNALGE GDTCFFRALR  360
QGSAGGGGED HLLKVEVRRR DGSFLV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14352RRGRGRRRKE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168607.11e-173B3 domain-containing protein Os03g0212300-like
SwissprotQ10Q262e-76Y3123_ORYSJ; B3 domain-containing protein Os03g0212300
TrEMBLA0A3B6HNE10.0A0A3B6HNE1_WHEAT; Uncharacterized protein
STRINGTraes_4AS_3698CBB71.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47483264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.19e-17B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]