PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4AS_19FA06316.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GRAS | ||||||||
Protein Properties | Length: 561aa MW: 59862.2 Da PI: 5.1321 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 307.7 | 2.7e-94 | 122 | 513 | 1 | 373 |
GRAS 1 lvelLlecAeavss..gdlelaqalLarlsel.aspdgd....pmqRlaayfteALaarlar..svselykalppsetseknsseela 79 l +lL+++Aea+s ++ ela+ +L rl+e+ +s +g+ +m+Rlaa+ft AL+ l + sv +++++ ++ +++++++ ++l+ Traes_4AS_19FA06316.1 122 LLHLLMAAAEALSGphKSRELARVILVRLKEMvSSTSGNagasNMERLAAHFTDALQGLLDGshSVAGTSRQAAMAASHHHSTGDVLT 209 579**********8557777************555555566669****************99556677888888888888889***** PP GRAS 80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerL 165 a+++++++sP++kf+h+taNqaIleav+g++rvHi+D+d+ +G+QW++L+qa++sRp +pp+lRiT++ ++ g +++++e g+rL Traes_4AS_19FA06316.1 210 AFQMLQDMSPYMKFGHFTANQAILEAVAGDRRVHIVDYDLAEGIQWASLMQAMTSRPdgVSPPHLRITAITRSGGGGARAVQEAGRRL 297 *********************************************************6666***********7777************ PP GRAS 166 akfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadh..ns 250 a fA ++g pf+f ++ e +++ + r+ +gE+l+ n++l+ +v + ++L + sl +kvv+vve+e + n+ Traes_4AS_19FA06316.1 298 AAFAGSIGQPFSFGHCRLDSDERFRPATVRMVKGETLVANCILHQAAAT-TTVRRPTgSVASFLTGMASLGAKVVTVVEEEGEAekNE 384 **************99999**********************99665554.333333347899******************97763255 PP GRAS 251 e........sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330 e F+ rf+e l+ ysa+ dslea++p++s+ r vEr++l+++i +v+ + + + e + W e+++ +GF+ vpls Traes_4AS_19FA06316.1 385 EeasdaaagGFVGRFMEELHRYSAVWDSLEAGFPTQSRVRGLVERVILAPNIAGAVSRAYRG--TDGEGRRGWGEWMRGSGFEMVPLS 470 599999999************************************************99887..899999****************** PP GRAS 331 ekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaW 373 ++ +qa+lll ++ dgy+vee + +vlgWk r+L+s+S+W Traes_4AS_19FA06316.1 471 CFNHSQARLLLGLFN-DGYTVEETrPNKIVLGWKARRLLSASVW 513 ***************.******87367788************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 49.997 | 96 | 494 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.4E-92 | 122 | 513 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 561 aa Download sequence Send to blast |
MDVTMEDVVG DLEISGYSSI STSPSSSLDD GMGLYGWNAL SPVADWGLFS SDDGGHDLHG 60 LIESMLCDDA LIGKPDEHPT MFTDGPCYSN ASEPSSTTTT NPGTPVQHDD TPDCNPEKGL 120 RLLHLLMAAA EALSGPHKSR ELARVILVRL KEMVSSTSGN AGASNMERLA AHFTDALQGL 180 LDGSHSVAGT SRQAAMAASH HHSTGDVLTA FQMLQDMSPY MKFGHFTANQ AILEAVAGDR 240 RVHIVDYDLA EGIQWASLMQ AMTSRPDGVS PPHLRITAIT RSGGGGARAV QEAGRRLAAF 300 AGSIGQPFSF GHCRLDSDER FRPATVRMVK GETLVANCIL HQAAATTTVR RPTGSVASFL 360 TGMASLGAKV VTVVEEEGEA EKNEEEASDA AAGGFVGRFM EELHRYSAVW DSLEAGFPTQ 420 SRVRGLVERV ILAPNIAGAV SRAYRGTDGE GRRGWGEWMR GSGFEMVPLS CFNHSQARLL 480 LGLFNDGYTV EETRPNKIVL GWKARRLLSA SVWAPPPLSV PSSPADGVCQ PMGMAPSSGG 540 FGRTEYDYVD SFLVEPAYAL V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 3e-51 | 164 | 515 | 53 | 379 | Protein SCARECROW |
5b3h_D | 3e-51 | 164 | 515 | 53 | 379 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020151677.1 | 0.0 | nodulation-signaling pathway 2 protein-like | ||||
Swissprot | Q5NE24 | 1e-158 | NSP2_MEDTR; Nodulation-signaling pathway 2 protein | ||||
TrEMBL | A0A3B6HT47 | 0.0 | A0A3B6HT47_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446QRF0 | 0.0 | A0A446QRF0_TRITD; Uncharacterized protein | ||||
STRING | Traes_4AS_19FA06316.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7580 | 31 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08250.1 | 7e-99 | GRAS family protein |
Publications ? help Back to Top | |||
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