PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4AS_0DA136E0E.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WRKY | ||||||||
Protein Properties | Length: 135aa MW: 14952.7 Da PI: 8.8976 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 49.4 | 9.4e-16 | 5 | 56 | 11 | 59 |
EEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 11 GqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 GqKe+++s++prsYYrCt++ gC++k++ + +++ p +itY geH+++ Traes_4AS_0DA136E0E.1 5 GQKEIQNSTHPRSYYRCTHKsdqGCNAKRQAQICETHPIKYDITYYGEHTCK 56 9******************99999**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 15.078 | 1 | 58 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-19 | 2 | 57 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.0E-16 | 5 | 58 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-16 | 5 | 58 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.3E-16 | 5 | 56 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MAEDGQKEIQ NSTHPRSYYR CTHKSDQGCN AKRQAQICET HPIKYDITYY GEHTCKPPSN 60 TPMIIVAASD DRAENLVSFA PTFPHLAPGS APALTTCSAP RPIHSCRRTS SPPSWDRPGG 120 RPRWWGRCRT TAGVG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 2e-18 | 5 | 56 | 18 | 69 | OsWRKY45 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR827398 | 1e-126 | KR827398.1 Triticum aestivum WRKY47 transcriptional factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020185911.1 | 2e-54 | probable WRKY transcription factor 64 | ||||
TrEMBL | A0A446QVS4 | 4e-96 | A0A446QVS4_TRITD; Uncharacterized protein | ||||
STRING | Traes_4AS_0DA136E0E.1 | 7e-97 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13981 | 25 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56400.1 | 4e-17 | WRKY DNA-binding protein 70 |
Publications ? help Back to Top | |||
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