PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_ECC1C3641.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 563aa    MW: 63341 Da    PI: 6.767
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_ECC1C3641.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.85.3e-10261071299
                            HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                     B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                             ++ +++p +  ++ g+    s t++le ++g      +  r+k g+ vl++GW +Fv  ++++e+ ++ F + g+s+f  +v++f++
  Traes_4AL_ECC1C3641.2  26 FRHSMCIPQEVGNHLGS--MISETIKLEAPNGIFHIGVC--RRKTGELVLRAGWDKFVAMHHIEENYSFWFVYRGNSTF--KVHIFNS 107
                            4567999*999955554..47889******997666666..999999**************************999999..9999875 PP
2B3345.2e-11196280997
                            HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                     B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                             +lk + + lp k +e+++++ +++ t++le ++   + v+   +k+++  +vl+ GW++ v+an+++e+D +vF  +g  +++l v+
  Traes_4AL_ECC1C3641.2 196 VNLKDCSVNLPLKLVEHFKED-TSKATIQLEAPNDMIYGVEA--CKHGDDqIVLQYGWNNLVDANRIQENDLLVFITKG--TKRLEVR 278
                            45678999*******777666.5678****************..5555545*************************665..4445777 PP

                            EE CS
                     B3  96 vf 97 
                            ++
  Traes_4AL_ECC1C3641.2 279 IL 280
                            76 PP
3B343.17.7e-14463559399
                            EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS
                     B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 
                             v ++++  + ++l +  ++ ++h       ++++l+l+ e g + + +l ++++++r ++++GW++Fv +n+++egD+++F++ ++ 
  Traes_4AL_ECC1C3641.2 463 VVVMTKSRINADQLGFRMEYGARHipH--LGRKMDLMLQAEGGTEQRTRLVIDQNGKR-WIRRGWQQFVTENKVREGDICLFERGESt 547
                            455677777778899999998899652..347799***************99888877.79**********************88777 PP

                            SEE..EEEEE-S CS
                     B3  88 sefelvvkvfrk 99 
                            ++ +++v ++rk
  Traes_4AL_ECC1C3641.2 548 KKLRMTVYFIRK 559
                            999999999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-1612109IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.2E-1414109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.62815108IPR003340B3 DNA binding domain
SMARTSM010190.007418108IPR003340B3 DNA binding domain
CDDcd100177.99E-1225106No hitNo description
PfamPF023624.9E-827107IPR003340B3 DNA binding domain
SuperFamilySSF1019366.08E-15180282IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.8E-15181282IPR015300DNA-binding pseudobarrel domain
CDDcd100174.53E-11185280No hitNo description
SMARTSM010197.9E-6187283IPR003340B3 DNA binding domain
PROSITE profilePS508639.827188283IPR003340B3 DNA binding domain
PfamPF023624.2E-8195279IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-17454559IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-17455560IPR015300DNA-binding pseudobarrel domain
CDDcd100179.13E-14460555No hitNo description
PROSITE profilePS508639.939461560IPR003340B3 DNA binding domain
SMARTSM010191.5E-8462560IPR003340B3 DNA binding domain
PfamPF023621.2E-12462559IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MWWRHYPRNH VGDDKTQFVA VATGGFRHSM CIPQEVGNHL GSMISETIKL EAPNGIFHIG  60
VCRRKTGELV LRAGWDKFVA MHHIEENYSF WFVYRGNSTF KVHIFNSNGH EKATSCSKPP  120
SESFGGVPPA ATCDHHVLNE QVPSVSGNVQ TSTDSGYSML PGCHLTKAQD EKVRELACTM  180
RSQVPLYVAV MNKSNVNLKD CSVNLPLKLV EHFKEDTSKA TIQLEAPNDM IYGVEACKHG  240
DDQIVLQYGW NNLVDANRIQ ENDLLVFITK GTKRLEVRIL GTSVHQRTSS CFDVGNISST  300
QEIREDSLEI TDPPPHTDYY VSSSDDDHIM EEGYYVSSSD DDHIAEEDYV SSSDADHIVE  360
EGTRKSGRRQ KQAPSRYAKA QKVASTSSPS AAKSAGYEAH KLNERASVEF GINLEPHSST  420
SNLEGPSQYP YVLSEGRTSL SSVEKEKVEE KVQAIQSELP IFVVVMTKSR INADQLGFRM  480
EYGARHIPHL GRKMDLMLQA EGGTEQRTRL VIDQNGKRWI RRGWQQFVTE NKVREGDICL  540
FERGESTKKL RMTVYFIRKS SQT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3B6HWQ50.0A0A3B6HWQ5_WHEAT; Uncharacterized protein
TrEMBLA0A446R9S80.0A0A446R9S8_TRITD; Uncharacterized protein
STRINGTraes_4AL_ECC1C3641.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16378713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-13B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]