PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4AL_DC57F1ACA.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 299aa MW: 33556.9 Da PI: 4.7636 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54.7 | 1.9e-17 | 31 | 109 | 13 | 97 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++ +++pkkf++++ggk s+t+ le+++g+ + +++ +k+ g +vl +GW+ F ++++++e+D+++F+++++s+fe v v+ Traes_4AL_DC57F1ACA.1 31 RHGMIIPKKFIDNFGGK--ISRTIELESSNGNMYVFEV--SKRMGNTVLHRGWQAFIDEHHIEENDSLLFRHIEKSRFE--VLVL 109 567********999998..888****************..********************************9989995..4444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.75E-20 | 15 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 3.7E-9 | 18 | 112 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.914 | 19 | 112 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-19 | 21 | 113 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.68E-18 | 30 | 110 | No hit | No description |
Pfam | PF02362 | 1.8E-15 | 31 | 108 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MEKLCDCCKR YADHLDEKMK CFRRHVGADF RHGMIIPKKF IDNFGGKISR TIELESSNGN 60 MYVFEVSKRM GNTVLHRGWQ AFIDEHHIEE NDSLLFRHIE KSRFEVLVLD SDDCEKVFFC 120 PGINIVNNVE ERGADSVNIS NSSRDYATRS SGSKRFATCG RGNSSHPRKA AKTTLNYSSP 180 ENSGEDTENE NTDAIYSSSE DSGEETEPAN TDIEYSSSGD SEEGTEDIPS EHESSFELDD 240 GHTPSRQDYV LARGRTLSRV QDEKVTTLIQ DVGAEIPVFV AVMKPSYVKS QTSALVCFT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020189914.1 | 0.0 | B3 domain-containing protein Os03g0620400-like | ||||
TrEMBL | A0A446R6H1 | 0.0 | A0A446R6H1_TRITD; Uncharacterized protein | ||||
STRING | Traes_4AL_DC57F1ACA.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP585 | 31 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 3e-11 | B3 family protein |
Publications ? help Back to Top | |||
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