PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_D883FDB1D.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 299aa    MW: 33387.9 Da    PI: 4.6942
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_D883FDB1D.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.72.4e-14311091397
                            TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                     B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                            ++ +++pkkf++++ggk   s+t+ le+++g+ + +++  +k  g +v+ +GW+ F ++ ++ e+D+++F+++++s+fe  v v+
  Traes_4AL_D883FDB1D.1  31 RHGMIIPKKFIDNFGGK--ISRTIELESSNGNMYVFEV--SKLMGNTVIHRGWQAFIDELHIIENDSLLFRHIEKSRFE--VLVL 109
                            567********999998..888****************..9*******************************9989995..4444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-1617113IPR015300DNA-binding pseudobarrel domain
SMARTSM010199.2E-618112IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-1818116IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.54619112IPR003340B3 DNA binding domain
CDDcd100178.76E-1520110No hitNo description
PfamPF023623.1E-1231108IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MEKLCDCCKR YADHLDEKMK CFRRHMGADF RHGMIIPKKF IDNFGGKISR TIELESSNGN  60
MYVFEVSKLM GNTVIHRGWQ AFIDELHIIE NDSLLFRHIE KSRFEVLVLD SDDCEKVFFC  120
PGINIACNAE ERGVDSVNIS NGSRDNATRS SGSKRFATCG RGNSSHPRKA AKTTLNYSSP  180
ENSGEDTENE NTDAIYSSSE DSGEETEPAN TDIEYSSSGD SEEGTEDIPS EHESSFELDD  240
GHTPSRQDYV LARGRTLSRV QDEKVTTLIQ DVGAEIPVFV AVMKPSYVKS QTSALVCFT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189914.10.0B3 domain-containing protein Os03g0620400-like
TrEMBLA0A446R4B70.0A0A446R4B7_TRITD; Uncharacterized protein
STRINGTraes_4AL_D883FDB1D.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58531172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.18e-09B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]