PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_A8CBB811B.16
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRF
Protein Properties Length: 433aa    MW: 48568.8 Da    PI: 9.3617
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_A8CBB811B.16genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC73.52.3e-23161205145
                     WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                             d+epgrCrRtDGKkWRCs+++++ +k+CErH++r+r+rsrk++e+
  Traes_4AL_A8CBB811B.16 161 DPEPGRCRRTDGKKWRCSKEAMAEHKYCERHINRNRHRSRKPVEN 205
                             79****************************************997 PP
2QLQ54.73.1e-19102137237
                     QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                             +FT++Q+++L++Q+l+yKyL+a++P+P+ Ll  i+k
  Traes_4AL_A8CBB811B.16 102 PFTPSQWMELEHQALIYKYLNAKAPIPSGLLISISK 137
                             8*****************************999975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.0E-10101137IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.1E-13102135IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.277102137IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.151161205IPR014977WRC domain
PfamPF088791.6E-19162204IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MAMGIRSNLP IHWGPSCSAK AAPFHCFFLL LYLSTLLSSL GACNNKKQIN KHIHGYFQDK  60
AVASLSIFAH AEWGFLFFFL HLGMDFGRSN EQRLLLARSK MPFTPSQWME LEHQALIYKY  120
LNAKAPIPSG LLISISKSFR PSSDRMPWRP VYQGFTNADS DPEPGRCRRT DGKKWRCSKE  180
AMAEHKYCER HINRNRHRSR KPVENQTRKN AKETPAAGSI SAAVSQGGCK KAKAGDELKP  240
GSVSYWTDNL NRAMVSKARG NNPEEGNSAP LLNSTNQQHT LSLFSQLKQQ SKPDKFSPAV  300
DSESISSNTV LKPWERSNQQ SSKDVSSTTL HDRGCLQSVL QDFSMHKNDK IESQKNNASV  360
PSTFYSSTEG RHISCLASNM MQVQEDCISS SWEIPQGGPL GEILTNSKNT DDLTNKCESR  420
SYGWLLSLDE HEM
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020196595.10.0growth-regulating factor 9-like
SwissprotQ9FRG80.0GRF9_ORYSJ; Growth-regulating factor 9
TrEMBLA0A446RAA80.0A0A446RAA8_TRITD; Uncharacterized protein
STRINGTraes_4AL_A8CBB811B.160.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131242529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.11e-44growth-regulating factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]