PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_784CF40E5.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 578aa    MW: 61806 Da    PI: 4.8528
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_784CF40E5.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.000116485223
                           EETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                           kC +C++ F ++  L+rH r+H
  Traes_4AL_784CF40E5.1 64 KCAKCPREFCSSVALRRHTRVH 85
                           7*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.0146385IPR007087Zinc finger, C2H2
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MAASGSGSGS GQIQPLKIPD AVVALAQAAA KANNSSNSAA AADATDKYLP GWPLFSPPKM  60
QLTKCAKCPR EFCSSVALRR HTRVHRRALK IDKDFPKNRD HLAAFWDKLT VDQAQAILSL  120
EGVAIEETSA LFILTSLSSW MCKPGYASLP LPYARAGNEL LDLIQTAASR LPISSNELFI  180
MLDEASENTF LCTNAADAGF VQKFLFDGEV EKVATELKNV VACTSYILEQ KLVEAWSADK  240
AAEALRCQKL LVEEEDAAQK RQAEIMERKR MKKLRQKEQR LKDLKDEGTM VQLPEVVDGA  300
TSSPGIQSLE AVSGPGLHEQ EDPQHLQLSA PVPSDDNGCN GEDANCGSGQ EIDTAAVFRE  360
QAMATSNLDR AENLPPNSSV SGSSATASKH PSSSSVRHSR HREPNVGAAT NKSKTWAWKV  420
RTGVEERCPK GEPDVDANQE TAPLNTDKNS QVLIGSISVA IEDGGGCSQD SKDNHPAPPE  480
SDSNTLNDPV AKVMQPTSHD ENGCEDANGG TITPAAEDHS PSSIMTDESG SVCGNVESAE  540
SVGLQRGTMM SSGQEAAAFL SQRWKEAVAG DHVKLVLC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1266273ERKRMKKL
2271281KKLRQKEQRLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3559140.0AK355914.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1027M18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160651.10.0uncharacterized protein LOC109745950
TrEMBLA0A3B6I2480.0A0A3B6I248_WHEAT; Uncharacterized protein
STRINGTraes_4AL_784CF40E5.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85032430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.14e-86C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]