PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_77F4CC833.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 77aa    MW: 8455.7 Da    PI: 4.5122
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_77F4CC833.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS86.54.3e-27173123195
                   GRAS 123 lQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                            +QWpaLlqaLa Rp+gpps+R+Tgvg+p+++++++l+++g++La+fA++++v+f+++ lva +l+dle+ +L+
  Traes_4AL_77F4CC833.1   1 MQWPALLQALALRPGGPPSFRLTGVGPPQPDETDALQQVGWKLAQFAHTIRVDFQYRGLVAATLADLEPFMLQ 73 
                            8********************************************************************9996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035141.5E-24173IPR005202Transcription factor GRAS
PROSITE profilePS5098518.566177IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
MQWPALLQAL ALRPGGPPSF RLTGVGPPQP DETDALQQVG WKLAQFAHTI RVDFQYRGLV  60
AATLADLEPF MLQPEGE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. In contrast, its overexpression prevents the GA signaling pathway and induces a dwarf phenotype. {ECO:0000250|UniProtKB:Q7G7J6}.
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. In contrast, its overexpression prevents the GA signaling pathway and induces a dwarf phenotype. {ECO:0000269|PubMed:10713441, ECO:0000269|PubMed:11826299, ECO:0000269|PubMed:20400938}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated following GA3 but not ABA application. {ECO:0000269|PubMed:10713441}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR6685841e-126FR668584.2 Triticum aestivum rht-A1 gene, allele a.
GenBankFR6685851e-126FR668585.1 Triticum aestivum rht-A1 gene, allele b.
GenBankGQ4513331e-126GQ451333.1 Triticum aestivum cultivar Xiaoyan 54 DELLA protein Rht-A1 gene, complete cds.
GenBankHE5856381e-126HE585638.1 Triticum aestivum partial Rht-A1 gene for Reduced height-1 protein, allele Rht-A1c.
GenBankHE5856391e-126HE585639.1 Triticum aestivum partial Rht-A1 gene for Reduced height-1 protein, allele Rht-A1d.
GenBankHE5856401e-126HE585640.1 Triticum aestivum partial Rht-A1 gene for Reduced height-1 protein, allele Rht-A1e.
GenBankHE5856411e-126HE585641.1 Triticum aestivum partial Rht-A1 gene for Reduced height-1 protein, allele Rht-A1f.
GenBankHE5856421e-126HE585642.1 Triticum aestivum partial Rht-A1 gene for Reduced height-1 protein, allele Rht-A1g.
GenBankJF9302771e-126JF930277.1 Triticum aestivum DELLA protein (Rht-A1) gene, Rht-A1a allele, complete cds.
GenBankKC6145851e-126KC614585.1 Triticum aestivum cultivar Paragon bio-material NIAB EW10 haplotype Rht-A1a_2 DELLA protein (Rht-A1) gene, complete cds.
GenBankKC6145861e-126KC614586.1 Triticum aestivum cultivar Precoce a Barbe Blanche bio-material INRA:05816 haplotype Rht-A1a_2 DELLA protein (Rht-A1) gene, complete cds.
GenBankKC6145871e-126KC614587.1 Triticum aestivum cultivar Robigus bio-material NIAB EW66-3 haplotype Rht-A1a_2 DELLA protein (Rht-A1) gene, complete cds.
GenBankKC6145881e-126KC614588.1 Triticum aestivum cultivar Soissons bio-material NIAB EW9 haplotype Rht-A1a_2 DELLA protein (Rht-A1) gene, complete cds.
GenBankKC6145891e-126KC614589.1 Triticum aestivum cultivar Squarehead's Master bio-material JIC:8551 haplotype Rht-A1a_2 DELLA protein (Rht-A1) gene, complete cds.
GenBankKC6145901e-126KC614590.1 Triticum aestivum cultivar Strubes Dickkopf bio-material INRA:06740 haplotype Rht-A1a_2 DELLA protein (Rht-A1) gene, complete cds.
GenBankKC6145911e-126KC614591.1 Triticum aestivum cultivar Xi19 bio-material NIAB EW11-3 haplotype Rht-A1a_2 DELLA protein (Rht-A1) gene, complete cds.
GenBankKC6145921e-126KC614592.1 Triticum aestivum cultivar W7984 bio-material INRA:13812 haplotype Rht-A1a_6 DELLA protein (Rht-A1) gene, complete cds.
GenBankKC6145931e-126KC614593.1 Triticum aestivum cultivar CF4563-1-5-3-2-5 bio-material INRA:01974 haplotype Rht-A1a_2 DELLA protein (Rht-A1) gene, complete cds.
GenBankKC7679241e-126KC767924.1 Triticum aestivum cultivar Wangshuibai DELLA (Rht-A1) gene, Rht-A1a allele, complete cds.
GenBankKF2826291e-126KF282629.1 Triticum aestivum cultivar Chinese Spring clone BAC 351D1 chromosome 4A DELLA protein (Rht-A) gene, complete cds, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631543.11e-46DELLA protein SLR1
SwissprotQ2TN881e-47SLR1_ORYSI; DELLA protein SLR1
SwissprotQ7G7J69e-48SLR1_ORYSJ; DELLA protein SLR1
TrEMBLA1KZC29e-48A1KZC2_ORYRU; GAI (Fragment)
TrEMBLA1KZC39e-48A1KZC3_ORYRU; GAI (Fragment)
STRINGMLOC_67940.15e-47(Hordeum vulgare)
STRINGTraes_4AL_77F4CC833.12e-48(Triticum aestivum)
STRINGTraes_4DS_ADBA6E30A.13e-47(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.17e-34RGA-like 2
Publications ? help Back to Top
  1. Ueguchi-Tanaka M, et al.
    Rice dwarf mutant d1, which is defective in the alpha subunit of the heterotrimeric G protein, affects gibberellin signal transduction.
    Proc. Natl. Acad. Sci. U.S.A., 2000. 97(21): p. 11638-43
    [PMID:11027362]
  2. Ikeda A, et al.
    The slender rice mutant, with constitutively activated gibberellin signal transduction, has enhanced capacity for abscisic acid level.
    Plant Cell Physiol., 2002. 43(9): p. 974-9
    [PMID:12354914]
  3. Itoh H,Matsuoka M,Steber CM
    A role for the ubiquitin-26S-proteasome pathway in gibberellin signaling.
    Trends Plant Sci., 2003. 8(10): p. 492-7
    [PMID:14557046]
  4. Oguchi K,Tanaka N,Komatsu S,Akao S
    Methylmalonate-semialdehyde dehydrogenase is induced in auxin-stimulated and zinc-stimulated root formation in rice.
    Plant Cell Rep., 2004. 22(11): p. 848-58
    [PMID:15045523]
  5. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  6. Oikawa T,Koshioka M,Kojima K,Yoshida H,Kawata M
    A role of OsGA20ox1 , encoding an isoform of gibberellin 20-oxidase, for regulation of plant stature in rice.
    Plant Mol. Biol., 2004. 55(5): p. 687-700
    [PMID:15604710]
  7. Komorisono M, et al.
    Analysis of the rice mutant dwarf and gladius leaf 1. Aberrant katanin-mediated microtubule organization causes up-regulation of gibberellin biosynthetic genes independently of gibberellin signaling.
    Plant Physiol., 2005. 138(4): p. 1982-93
    [PMID:16040652]
  8. Tanaka N, et al.
    Proteome approach to characterize the methylmalonate-semialdehyde dehydrogenase that is regulated by gibberellin.
    J. Proteome Res., 2005 Sep-Oct. 4(5): p. 1575-82
    [PMID:16212409]
  9. Itoh H, et al.
    Overexpression of a GRAS protein lacking the DELLA domain confers altered gibberellin responses in rice.
    Plant J., 2005. 44(4): p. 669-79
    [PMID:16262715]
  10. Luo A, et al.
    EUI1, encoding a putative cytochrome P450 monooxygenase, regulates internode elongation by modulating gibberellin responses in rice.
    Plant Cell Physiol., 2006. 47(2): p. 181-91
    [PMID:16306061]
  11. Tsuji H, et al.
    GAMYB controls different sets of genes and is differentially regulated by microRNA in aleurone cells and anthers.
    Plant J., 2006. 47(3): p. 427-44
    [PMID:16792694]
  12. Shimada A, et al.
    The rice SPINDLY gene functions as a negative regulator of gibberellin signaling by controlling the suppressive function of the DELLA protein, SLR1, and modulating brassinosteroid synthesis.
    Plant J., 2006. 48(3): p. 390-402
    [PMID:17052323]
  13. Ueguchi-Tanaka M,Nakajima M,Motoyuki A,Matsuoka M
    Gibberellin receptor and its role in gibberellin signaling in plants.
    Annu Rev Plant Biol, 2007. 58: p. 183-98
    [PMID:17472566]
  14. Liu T,Gu JY,Xu CJ,Gao Y,An CC
    Overproduction of OsSLRL2 alters the development of transgenic Arabidopsis plants.
    Biochem. Biophys. Res. Commun., 2007. 358(4): p. 983-9
    [PMID:17521606]
  15. Ueguchi-Tanaka M, et al.
    Molecular interactions of a soluble gibberellin receptor, GID1, with a rice DELLA protein, SLR1, and gibberellin.
    Plant Cell, 2007. 19(7): p. 2140-55
    [PMID:17644730]
  16. Eckardt NA
    GA perception and signal transduction: molecular interactions of the GA receptor GID1 with GA and the DELLA protein SLR1 in rice.
    Plant Cell, 2007. 19(7): p. 2095-7
    [PMID:17918309]
  17. Zhang Y, et al.
    Gibberellin homeostasis and plant height control by EUI and a role for gibberellin in root gravity responses in rice.
    Cell Res., 2008. 18(3): p. 412-21
    [PMID:18268540]
  18. Aleman L, et al.
    Functional analysis of cotton orthologs of GA signal transduction factors GID1 and SLR1.
    Plant Mol. Biol., 2008. 68(1-2): p. 1-16
    [PMID:18506581]
  19. Ueguchi-Tanaka M,Hirano K,Hasegawa Y,Kitano H,Matsuoka M
    Release of the repressive activity of rice DELLA protein SLR1 by gibberellin does not require SLR1 degradation in the gid2 mutant.
    Plant Cell, 2008. 20(9): p. 2437-46
    [PMID:18827181]
  20. Fukao T,Bailey-Serres J
    Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(43): p. 16814-9
    [PMID:18936491]
  21. Asano K, et al.
    Isolation and characterization of dominant dwarf mutants, Slr1-d, in rice.
    Mol. Genet. Genomics, 2009. 281(2): p. 223-31
    [PMID:19066966]
  22. Kojima M, et al.
    Highly sensitive and high-throughput analysis of plant hormones using MS-probe modification and liquid chromatography-tandem mass spectrometry: an application for hormone profiling in Oryza sativa.
    Plant Cell Physiol., 2009. 50(7): p. 1201-14
    [PMID:19369275]
  23. Hirano K, et al.
    Characterization of the molecular mechanism underlying gibberellin perception complex formation in rice.
    Plant Cell, 2010. 22(8): p. 2680-96
    [PMID:20716699]
  24. Hayashi-Tsugane M, et al.
    A rice mutant displaying a heterochronically elongated internode carries a 100 kb deletion.
    J Genet Genomics, 2011. 38(3): p. 123-8
    [PMID:21477784]
  25. Fukumoto T, et al.
    Rare sugar D-allose suppresses gibberellin signaling through hexokinase-dependent pathway in Oryza sativa L.
    Planta, 2011. 234(6): p. 1083-95
    [PMID:21717189]
  26. Bhattacharyya J, et al.
    Native polyubiquitin promoter of rice provides increased constitutive expression in stable transgenic rice plants.
    Plant Cell Rep., 2012. 31(2): p. 271-9
    [PMID:21996937]
  27. Wu J, et al.
    Dominant and pleiotropic effects of a GAI gene in wheat results from a lack of interaction between DELLA and GID1.
    Plant Physiol., 2011. 157(4): p. 2120-30
    [PMID:22010107]
  28. De Vleesschauwer D, et al.
    Brassinosteroids antagonize gibberellin- and salicylate-mediated root immunity in rice.
    Plant Physiol., 2012. 158(4): p. 1833-46
    [PMID:22353574]
  29. Phanchaisri B,Samsang N,Yu L,Singkarat S,Anuntalabhochai S
    Expression of OsSPY and 14-3-3 genes involved in plant height variations of ion-beam-induced KDML 105 rice mutants.
    Mutat. Res., 2012. 734(1-2): p. 56-61
    [PMID:22445891]
  30. Mimura M,Nagato Y,Itoh J
    Rice PLASTOCHRON genes regulate leaf maturation downstream of the gibberellin signal transduction pathway.
    Planta, 2012. 235(5): p. 1081-9
    [PMID:22476293]
  31. Jiang X, et al.
    Gibberellin indirectly promotes chloroplast biogenesis as a means to maintain the chloroplast population of expanded cells.
    Plant J., 2012. 72(5): p. 768-80
    [PMID:23020316]
  32. Schmitz AJ,Folsom JJ,Jikamaru Y,Ronald P,Walia H
    SUB1A-mediated submergence tolerance response in rice involves differential regulation of the brassinosteroid pathway.
    New Phytol., 2013. 198(4): p. 1060-70
    [PMID:23496140]
  33. Hori K, et al.
    Hd16, a gene for casein kinase I, is involved in the control of rice flowering time by modulating the day-length response.
    Plant J., 2013. 76(1): p. 36-46
    [PMID:23789941]
  34. Sato T, et al.
    Expression and purification of a GRAS domain of SLR1, the rice DELLA protein.
    Protein Expr. Purif., 2014. 95: p. 248-58
    [PMID:24463428]
  35. Sakata T, et al.
    Reduction of gibberellin by low temperature disrupts pollen development in rice.
    Plant Physiol., 2014. 164(4): p. 2011-9
    [PMID:24569847]
  36. Wang W, et al.
    Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice.
    PLoS Genet., 2014. 10(3): p. e1004154
    [PMID:24625559]
  37. Mimura M,Itoh J
    Genetic interaction between rice PLASTOCHRON genes and the gibberellin pathway in leaf development.
    Rice (N Y), 2014. 7(1): p. 25
    [PMID:25243048]
  38. Yano K, et al.
    Comprehensive gene expression analysis of rice aleurone cells: probing the existence of an alternative gibberellin receptor.
    Plant Physiol., 2015. 167(2): p. 531-44
    [PMID:25511432]
  39. Fan T, et al.
    Rice osa-miR171c Mediates Phase Change from Vegetative to Reproductive Development and Shoot Apical Meristem Maintenance by Repressing Four OsHAM Transcription Factors.
    PLoS ONE, 2015. 10(5): p. e0125833
    [PMID:26023934]
  40. Zhu N, et al.
    The R2R3-type MYB gene OsMYB91 has a function in coordinating plant growth and salt stress tolerance in rice.
    Plant Sci., 2015. 236: p. 146-56
    [PMID:26025528]
  41. Ye Y, et al.
    CEF1/OsMYB103L is involved in GA-mediated regulation of secondary wall biosynthesis in rice.
    Plant Mol. Biol., 2015. 89(4-5): p. 385-401
    [PMID:26350403]
  42. Zhao QC, et al.
    Generation of insect-resistant and glyphosate-tolerant rice by introduction of a T-DNA containing two Bt insecticidal genes and an EPSPS gene.
    J Zhejiang Univ Sci B, 2015. 16(10): p. 824-31
    [PMID:26465130]
  43. De Vleesschauwer D, et al.
    The DELLA Protein SLR1 Integrates and Amplifies Salicylic Acid- and Jasmonic Acid-Dependent Innate Immunity in Rice.
    Plant Physiol., 2016. 170(3): p. 1831-47
    [PMID:26829979]
  44. Yang C,Ma Y,Li J
    The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway.
    J. Exp. Bot., 2016. 67(18): p. 5545-5556
    [PMID:27578842]