PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_5DF356F5A.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Trihelix
Protein Properties Length: 439aa    MW: 50189.1 Da    PI: 7.1645
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_5DF356F5A.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix811.7e-25120215186
               trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessst 78 
                            +Wt ++v++Li+a ++++e+ ++++         +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++ +++++++
  Traes_4AL_5DF356F5A.2 120 KWTGSMVKLLITAASYTGEDPGADQgvrrniaivQKKGKWKAISKVMGERGCSVSPQQCEDKFNDLNKRYKRLTDILGRGtACRVVEN 207
                            7*********************998888899999**********************************************55****** PP

               trihelix  79 cpyfdqle 86 
                             +++d+++
  Traes_4AL_5DF356F5A.2 208 PALLDSMH 215
                            *****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.6E-18118241No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MEGSNLPTGN MMQGIPYSGM NVHGSSMQMH ATNSGKQLFN QSQMLGSFAM PINRATAPDN  60
PGFQFGEHEK KDHHQQQQQQ QHSHYSKNSI SDEEEHDMTE DVTDTQNDKG KKGSAWHRMK  120
WTGSMVKLLI TAASYTGEDP GADQGVRRNI AIVQKKGKWK AISKVMGERG CSVSPQQCED  180
KFNDLNKRYK RLTDILGRGT ACRVVENPAL LDSMHHLSDK MKEDARKILN SKHLFYEQMC  240
SYHNNNRVNL PEDLALQHSL QVALRCKDEH DLRRDASADP EEGDQSADSD YEEHDKEHQT  300
VHTNLRDSSM NKRMCHAVDH GDVGFVTSSS NGVSGRFNPH DITLDINNAI PGGANLSFVR  360
KDLTSQQIEL QKHRLQTQEQ KLEVAKQRLK WERFRMKKDR EIERMTLENE QMMLQQKRLE  420
LQLRHNELEL ELKGNANHA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3669360.0AK366936.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2048K05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020174820.10.0uncharacterized protein LOC109760399
TrEMBLA0A3B6HWC50.0A0A3B6HWC5_WHEAT; Uncharacterized protein
TrEMBLA0A446R3J90.0A0A446R3J9_TRITD; Uncharacterized protein
STRINGTraes_4AL_5DF356F5A.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29203886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.12e-99sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]