PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4AL_5659286D11.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ZF-HD | ||||||||
Protein Properties | Length: 236aa MW: 24709.5 Da PI: 8.2366 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 87.5 | 1.3e-27 | 12 | 63 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 + +Y+eCl+NhAa+lG++a DGC+E++p+ ++++aal CaACgCHRnFHR+ Traes_4AL_5659286D11.1 12 REVYRECLRNHAAKLGTYASDGCCEYTPD---DSQPAALLCAACGCHRNFHRKAF 63 568*************************8...6789****************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 7.6E-23 | 14 | 62 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 6.6E-22 | 15 | 61 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-19 | 15 | 61 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 22.287 | 15 | 62 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 2.81E-17 | 109 | 185 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-27 | 111 | 186 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 9.3E-27 | 123 | 184 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MEQLQHQQER AREVYRECLR NHAAKLGTYA SDGCCEYTPD DSQPAALLCA ACGCHRNFHR 60 KAFLDGTASP GAASQHAPLM LPSPGAPPGY MHHHLAMAGP SGPGVAMGGG DGGGSHSGGG 120 SRRRTRTKFT DEQKARMLRF AERLGWRMPK REPGRAPGDD EVARFCREIG VTRQVFKVWM 180 HNHKAGVGGS GGAGAQTSSS TTRGGGGGGG GAGGMSPAMG GDGEDDEEVR GSEMCM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 6e-17 | 122 | 184 | 17 | 73 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC091532 | 9e-83 | AC091532.14 Oryza sativa chromosome 3 BAC OSJNBa0078A17 genomic sequence, complete sequence. | |||
GenBank | AP014959 | 9e-83 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 9e-83 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020168474.1 | 1e-136 | zinc-finger homeodomain protein 11-like | ||||
Swissprot | A2XLF4 | 2e-95 | ZHD11_ORYSI; Zinc-finger homeodomain protein 11 | ||||
Swissprot | Q10DV5 | 2e-95 | ZHD11_ORYSJ; Zinc-finger homeodomain protein 11 | ||||
TrEMBL | A0A3B6I0K2 | 1e-170 | A0A3B6I0K2_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446R836 | 1e-170 | A0A446R836_TRITD; Uncharacterized protein | ||||
STRING | Traes_4AL_5659286D11.1 | 1e-171 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9204 | 32 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 2e-43 | homeobox protein 22 |
Publications ? help Back to Top | |||
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