PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4AL_538993FFD.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 525aa MW: 58980 Da PI: 7.8372 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.1 | 1.8e-14 | 36 | 114 | 12 | 97 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 k + +++p++ ++ ++ s t++l +++gr+++v + + g+ vl++GW Fv a++++e+D+++F ++g+s+f +++f Traes_4AL_538993FFD.1 36 K-NSIRIPRELSTHLR--SRISDTIKLDTPNGRTYDVVV--TWEFGELVLRSGWDAFVTAHHIEENDTFLFIYHGNSNF--EIHIF 114 3.45999*99874444..45888****************..556667****************************9999..66666 PP | |||||||
2 | B3 | 38.3 | 2.3e-12 | 203 | 288 | 9 | 98 |
HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 + k + + +p + + +h +++++s ++le + g+ ++v+ +k+s+ +vl++ W Fv an+++ +D ++F+ + +++l+v Traes_4AL_538993FFD.1 203 VNVKDCSINIPLRLV-SHLKEEAGSAIIKLEAPGGNIYNVRA--SKHSEDqVVLQSDWDAFVAANHIQLNDLLIFHS--KGKTRLKVL 285 46678999******9.776678999*****************..7777777*************************3..356666776 PP EE- CS B3 96 vfr 98 +++ Traes_4AL_538993FFD.1 286 ALD 288 665 PP | |||||||
3 | B3 | 37.1 | 5.5e-12 | 439 | 509 | 18 | 90 |
--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 18 lpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 ++ +f++e+ + + +++tl+ ++ + W +l k++r ++ +GW++F+ +n+L+ gD+++Fk+ +r+++ Traes_4AL_538993FFD.1 439 FSLEFCAEYasTL-PSRDQTLI-LELEDKDWHTTL--HIKGSRKIIYRGWSKFACDNNLQLGDICLFKMAERRTR 509 4578999997533.34555666.556889******..66666678999********************8755333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.2E-17 | 22 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.21 | 24 | 117 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.9E-5 | 27 | 117 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.1E-17 | 27 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.55E-14 | 35 | 115 | No hit | No description |
Pfam | PF02362 | 2.5E-12 | 36 | 115 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.5E-16 | 185 | 298 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.37E-15 | 188 | 292 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.60E-14 | 192 | 288 | No hit | No description |
PROSITE profile | PS50863 | 9.502 | 195 | 290 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0015 | 197 | 290 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-9 | 203 | 286 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.77E-15 | 418 | 521 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.0E-16 | 418 | 521 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.00E-13 | 423 | 519 | No hit | No description |
SMART | SM01019 | 0.0022 | 425 | 521 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.7E-10 | 434 | 511 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.095 | 459 | 521 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 525 aa Download sequence Send to blast |
MNGDCENCAF WRDHYYWEHM GDEKKQFSAV AKGDFKNSIR IPRELSTHLR SRISDTIKLD 60 TPNGRTYDVV VTWEFGELVL RSGWDAFVTA HHIEENDTFL FIYHGNSNFE IHIFNSRGCE 120 KMASCFQPPS EIFGAFPPSE PCDHHVLNAA PNPRHVQTQV EFDYTMSTGC YLTKSQDEKV 180 VEIARKIRSE IPLYVAIMKK LNVNVKDCSI NIPLRLVSHL KEEAGSAIIK LEAPGGNIYN 240 VRASKHSEDQ VVLQSDWDAF VAANHIQLND LLIFHSKGKT RLKVLALDPS GCEKNSSCFD 300 TKKISKTGEG SVQITDARPC TVEIIDLTSS DDDHTEREDA GRSSGRRKQV PGSHAKAWKM 360 ASASSPSTKS GSDTHKLKHP ISNNDNLQGP SRPPYILARG VTLTGRVEKK VQEKVQAIGS 420 ELPIYVAVMT KSCVGGNLFS LEFCAEYAST LPSRDQTLIL ELEDKDWHTT LHIKGSRKII 480 YRGWSKFACD NNLQLGDICL FKMAERRTRG LAMRVHFICK SGVFL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A3B6HVR8 | 0.0 | A0A3B6HVR8_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446R6I0 | 0.0 | A0A446R6I0_TRITD; Uncharacterized protein | ||||
STRING | Traes_4AL_538993FFD.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16378 | 7 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 3e-22 | B3 family protein |
Publications ? help Back to Top | |||
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