PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_4AL_3BA1D51E2.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | LBD | ||||||||
Protein Properties | Length: 185aa MW: 19621.8 Da PI: 6.7713 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.3 | 1.3e-38 | 12 | 112 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C aCk+lrr+Ca++Cv+apyf+ae+ +++fa++hk+FGasn kll+++ + +r++a+++++yeA+ar+rdPvyG+v++i++lqqq+ Traes_4AL_3BA1D51E2.1 12 PCGACKFLRRRCAAECVFAPYFCAEDgASQFAAIHKVFGASNAAKLLQQVAPGDRSEAAATVTYEAQARLRDPVYGCVAHIFALQQQV 99 7***********************9989************************************************************ PP DUF260 88 eqlkaelallkee 100 + l+a++a+++++ Traes_4AL_3BA1D51E2.1 100 AALQAQVAHARTQ 112 ********99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.753 | 11 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-37 | 12 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MAGAGVTTTG SPCGACKFLR RRCAAECVFA PYFCAEDGAS QFAAIHKVFG ASNAAKLLQQ 60 VAPGDRSEAA ATVTYEAQAR LRDPVYGCVA HIFALQQQVA ALQAQVAHAR TQAHLGPAAT 120 AMHPLLQQQL QQQAWQVAEQ HDHQSMTSTQ SSSGCYSGAH QRSDGSSLHG AEMYCGYGEQ 180 EEGSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-34 | 10 | 112 | 9 | 110 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-34 | 10 | 112 | 9 | 110 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:19717544, PubMed:22974309). Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19 (PubMed:17259263). Functions in the initiation and emergence of lateral roots, in conjunction with LBD18, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:26059335}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:23749813}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT009057 | 0.0 | BT009057.1 Triticum aestivum clone wdr1f.pk002.l10:fis, full insert mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020197850.1 | 1e-93 | LOB domain-containing protein 29-like | ||||
Swissprot | Q9SLB7 | 1e-49 | LBD16_ARATH; LOB domain-containing protein 16 | ||||
TrEMBL | A0A446RG17 | 1e-131 | A0A446RG17_TRITD; Uncharacterized protein | ||||
STRING | Traes_4AL_3BA1D51E2.1 | 1e-132 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10262 | 33 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 1e-43 | lateral organ boundaries-domain 16 |