PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_22CE41C6F.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 576aa    MW: 62122.7 Da    PI: 4.5445
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_22CE41C6F.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1392.8e-43201581128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkya..tgkrknratksgyWk 84 
                            lp+GfrF+Ptdeelv +yLk+k++g+ ++   +i++vd+  vePwdLp +  +k+++ ew+fF++rd+ +   +++r+ r+t++gyWk
  Traes_4AL_22CE41C6F.1  20 LPVGFRFRPTDEELVRHYLKAKIAGRAHPDLLAIPDVDLAAVEPWDLPaRsVIKSDDPEWFFFARRDRPKYpgKSSRSCRSTAAGYWK 107
                            79*************************999899***************5347777888********9855435678999********* PP

                    NAM  85 atgkdkevlsk.......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            atgkd+ +          kg+l+g+kktLvf++grap+g +t W+mhey++
  Traes_4AL_22CE41C6F.1 108 ATGKDRLIRGPgpggcrgKGALIGVKKTLVFHRGRAPRGARTPWIMHEYTA 158
                            ********99999999888889***************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-4815193IPR003441NAC domain
PROSITE profilePS5100550.58220193IPR003441NAC domain
PfamPF023653.3E-2521157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MTTTAAGSES SSSSSTPAVL PVGFRFRPTD EELVRHYLKA KIAGRAHPDL LAIPDVDLAA  60
VEPWDLPARS VIKSDDPEWF FFARRDRPKY PGKSSRSCRS TAAGYWKATG KDRLIRGPGP  120
GGCRGKGALI GVKKTLVFHR GRAPRGARTP WIMHEYTATD PNPQSQSQSQ SQSQSQSAGP  180
QNDSFVLYRL FNKQDEEAPA PISEPPSTSP PANPLLQQAD DTASASMVED KASPSDSTQL  240
TPTNVTNDHS STAHVLAATA TGAAEQSADQ DAFMASLEQL PDIELQAEHQ RYDEFPMFNS  300
PMRPYTEFPF IGNMGDAQHD FSMYQDGTIN LDDILLTPAY DETGASNPTG SWTPYPEDLL  360
DSMLESGRSD IINSIGQDMG SMGAAPSAQQ QPTAPVELMD LQQGIAARRI RLAYAVDRAS  420
ASQPILACDS ESEEGEGESA GCSTESSSSN HEEDDHVNDA LFQTMAGDLM HNMAPAQALL  480
VSPVEVADKL QHLSFSDNSI LEQEEDGKPR RGAGLKQRVK QDSGQNGHDQ DGLVRNSGCV  540
PGPGDSSSET AVRRSLWVAL LVMAPLLVLV LVGVWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-342019615171Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171646.10.0uncharacterized protein LOC109757228
TrEMBLA0A3B6I4500.0A0A3B6I450_WHEAT; Uncharacterized protein
TrEMBLA0A446RN640.0A0A446RN64_TRITD; Uncharacterized protein
STRINGTraes_4AL_22CE41C6F.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134132529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.22e-53NAC transcription factor-like 9
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]