PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_21D75AE88.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TALE
Protein Properties Length: 496aa    MW: 54782.9 Da    PI: 7.2585
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_21D75AE88.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox246.7e-083133501954
                            HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
               Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                            Fe   ++yp+  ++  LA++ gL+ +qV++WF N R +
  Traes_4AL_21D75AE88.2 313 FEHflHPYPNDVDKHILARQSGLSRSQVSNWFINARVR 350
                            664459******************************88 PP
2BELL92.25.2e-30168237372
                   BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                            ++l+++ka+Lls++eeVd+ Y++y+e++++   sFeavag g+a++Yt+lA++a+SrhFrcL+da+++qi
  Traes_4AL_21D75AE88.2 168 MALERRKARLLSMVEEVDRCYRRYREKMRATELSFEAVAGTGAAHVYTKLAMRAMSRHFRCLRDALMGQI 237
                            7899****************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.3E-43100235IPR006563POX domain
PfamPF075264.8E-38106233IPR006563POX domain
PROSITE profilePS5007111.337291354IPR001356Homeobox domain
CDDcd000861.34E-11294355No hitNo description
SMARTSM003892.6E-8294358IPR001356Homeobox domain
SuperFamilySSF466897.27E-17295361IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-26297360IPR009057Homeodomain-like
PfamPF059202.5E-16311350IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MMASHEHHHH LLGFSSSSSP VTPSPAAMAM AFDHHGLLAL HDDMPPRPGG AHDRSWPPQV  60
STLSLYGPAG GGPSYSLAGG EHELQPFTMA PPWMMSMQQQ QQPFRLNSSR YLGPAKELLR  120
EFCSLEGDAM NGGVMMMQAP KRDDDVEASS PACGPWGANP SVSSMDYMAL ERRKARLLSM  180
VEEVDRCYRR YREKMRATEL SFEAVAGTGA AHVYTKLAMR AMSRHFRCLR DALMGQIRTL  240
KKSVGESRDA NGMLVAPGAS KGDTPRLRVV DQCLRRQRAF QQYGGAAAIE SCPWRPQRGL  300
PEHAVAVLRS WLFEHFLHPY PNDVDKHILA RQSGLSRSQV SNWFINARVR LWKPMIEKMY  360
AEETIQHDDH GASSGRGEPA PADQHNNNLA AWTTVTTTTD ESCHRFSSKN NPGDGFIPSS  420
FVADSRQFLH GYSSLHGDGG SGVVSLTLGL QQQQAFASPA MITQQQSPLM IGAEEEDMVL  480
PYKNLMGSEL LHDFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-14300358563Homeobox protein Meis2
3k2a_B2e-14300358563Homeobox protein Meis2
4xrm_A2e-14300358563Homeobox protein Meis2
4xrm_B2e-14300358563Homeobox protein Meis2
4xrs_A1e-14300357158Homeobox protein Meis1
4xrs_B1e-14300357158Homeobox protein Meis1
5bng_A1e-14300358159Homeobox protein Meis2
5bng_B1e-14300358159Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3607060.0AK360706.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1123N03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020149277.10.0homeobox protein BEL1 homolog
RefseqXP_020166134.10.0homeobox protein BEL1 homolog
TrEMBLA0A3B6I3840.0A0A3B6I384_WHEAT; Uncharacterized protein
STRINGTraes_4AL_21D75AE88.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63983547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.13e-89TALE family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]