PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_4AL_1D254E0E4.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Protein Properties

Length: 330aa MW: 37116.9 Da PI: 10.5623

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_4AL_1D254E0E4.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.3	8.6e-16	235	325	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k +t+s+v+ +l lpk+f+++h k ++ +tl de+g + + ++ rk + l++ Wk F+ ++L +gD +vF++++++ Traes_4AL_1D254E0E4.2 235 FVKPMTQSHVTGGFWLGLPKQFCTKHLPK--RDEWITLVDEKGAESDSYYLARKWG----LSAQWKAFAINHKLVDGDCLVFERIHQT 316 89**********************433..4558***********444444....9999***************88766 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +f +v++fr+ Traes_4AL_1D254E0E4.2 317 RF--KVHIFRQ 325 66..***97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.96E-23	228	326	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	8.1E-21	228	326	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.95E-25	233	324	No hit	No description
PROSITE profile	PS50863	9.855	235	326	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.9E-14	235	325	IPR003340	B3 DNA binding domain
SMART	SM01019	1.9E-17	235	326	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
NPSLRKRKRF RKFESRGSRP GTPSVPEPGA CTDHVQQAQA PRADGPDVCG PWTGSGVLLT 60 AHRQSNLLAA AAFLSGLLPI PISSPQRRER GRNPEIAGEK MAGAVAYEEQ RRRQVEENRR 120 KLDQLKLHHL SAALRDAAAA PRPSPAKSAK RKPRGPPPAD APPRRSGRVA SLPEQPNYRF 180 EDTYADIEKS IRGSRTHSTR TDLIDRVYAT EEARTHATDK AEQLQAKLDP SHPSFVKPMT 240 QSHVTGGFWL GLPKQFCTKH LPKRDEWITL VDEKGAESDS YYLARKWGLS AQWKAFAINH 300 KLVDGDCLVF ERIHQTRFKV HIFRQSSYYE

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK357200	0.0	AK357200.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1048A23.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020185096.1	1e-161	B3 domain-containing protein Os06g0194400-like isoform X2
Swissprot	Q69V36	2e-89	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	A0A446RIT1	1e-168	A0A446RIT1_TRITD; Uncharacterized protein
STRING	Traes_4AL_1D254E0E4.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1756	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	8e-50	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]